chr12 : 40,020,192 40,020,766
574 bp 54 TFs 0 linked genes
This 574 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:40,015,192 – 40,025,766
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 188 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 262 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 163 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 398 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DUXA 1 dataset
Motif ES_0h ES_0h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 148 bp overlap
EHF 1 dataset
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 145 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 157 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 359 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 327 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 265 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HOXC13 1 dataset
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
IRF2 1 dataset
Motif ES_0h ES_0h-IRF2_MA0051.2 16 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 406 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 218 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 522 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 555 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 237 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 574 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 512 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 362 bp overlap
ChIP hESC GSE20650.NANOG.hESC 231 bp overlap
ChIP hESC GSE18292.NANOG.hESC 269 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 272 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 193 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
NR6A1 1 dataset
Motif ES_0h ES_0h-NR6A1_MA1541.2 14 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 400 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 371 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 184 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 282 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 165 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 328 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 458 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 335 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 201 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RARA 2 datasets
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 265 bp overlap
RELA 1 dataset
Motif ES_0h ES_0h-RELA_MA0107.1 10 bp overlap
Rarb 1 dataset
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 375 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 567 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 456 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 479 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 520 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 574 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 560 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 551 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 411 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 348 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 332 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 437 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 289 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 332 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 102 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 345 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 183 bp overlap
SPIC 1 dataset
Motif ES_0h ES_0h-SPIC_MA0687.2 13 bp overlap
SREBF2 1 dataset
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
Spi1 1 dataset
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 165 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 2 datasets
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 452 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 352 bp overlap
YY1 1 dataset
ChIP H1 ENCFF524BTL 337 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCFF896CCA 223 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 464 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap