chr11 : 78,399,160 – 78,399,546

386 bp 69 TFs 0 linked genes

This 386 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

69 transcription factors

ARID1B 1 dataset

ChIP K562 ENCFF938UXQ 54 bp overlap

ARID2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 190 bp overlap

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 214 bp overlap

CRY2 1 dataset

ChIP U2OS GSE130602.CRY2.U2OS 171 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap

CUX2 1 dataset

Motif DE_12h DE_12h-CUX2_MA0755.2 9 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 153 bp overlap

ERG 1 dataset

ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 146 bp overlap

ETS1 1 dataset

ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap

ETV2::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap

ETV5::FIGLA 1 dataset

Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap

Ebf2 1 dataset

Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 386 bp overlap

ChIP DE DE-FOXA2-2 386 bp overlap

FOXC1 1 dataset

Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 386 bp overlap

ChIP DE DE-GATA4-2 386 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 386 bp overlap

ChIP DE DE-GATA6-2 386 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 386 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 386 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 386 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 386 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 386 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

HMBOX1 4 datasets

ChIP K-562 ENCSR757IIU.HMBOX1.K-562 386 bp overlap

ChIP K562 ENCFF055GAZ 228 bp overlap

ChIP K562 ENCFF055GAZ 386 bp overlap

ChIP K562 ENCFF317JJX 252 bp overlap

HOXD12::ELK1 1 dataset

Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap

ISL2 1 dataset

Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 386 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 353 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 386 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 386 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 386 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 269 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 386 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 294 bp overlap

ChIP hESC GSE18292.NANOG.hESC 147 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 166 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 219 bp overlap

NFIB 1 dataset

Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap

NFYB 1 dataset

Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap

NIPBL 2 datasets

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 270 bp overlap

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 319 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

Nfat5 1 dataset

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

Nkx3-1 1 dataset

Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap

Nkx3-2 1 dataset

Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

Nr2e1 1 dataset

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

ONECUT1 1 dataset

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

ONECUT2 1 dataset

Motif DE_12h DE_12h-ONECUT2_MA0756.3 8 bp overlap

ONECUT3 1 dataset

Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap

PAX4 1 dataset

Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap

POU2F3 1 dataset

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU4F1 1 dataset

Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap

POU4F3 1 dataset

Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap

POU5F1 5 datasets

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 319 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 329 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 315 bp overlap

Plagl1 1 dataset

Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 241 bp overlap

RARA 1 dataset

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

RBM22 3 datasets

ChIP K-562 GSE120104.RBM22.K-562 179 bp overlap

ChIP K562 ENCFF420JDS 193 bp overlap

ChIP K562 ENCFF629OUL 196 bp overlap

RBPJ 1 dataset

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 386 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 386 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 386 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 386 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 386 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 337 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 386 bp overlap

SMAD3 3 datasets

ChIP BG03 GSE21614.SMAD3.BG03 211 bp overlap

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 276 bp overlap

SMARCA4 7 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 122 bp overlap

ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 306 bp overlap

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 207 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 91 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 161 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 386 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 292 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 281 bp overlap

SMARCC1 2 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 386 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 371 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 283 bp overlap

Stat6 1 dataset

Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 205 bp overlap

TAL1 1 dataset

ChIP PRIMA5 GSE33850.TAL1.PRIMA5 105 bp overlap

TBP 1 dataset

ChIP K562 ENCFF901UYM 57 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

ZKSCAN3 1 dataset

Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF184 1 dataset

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

ZNF320 1 dataset

Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF592 1 dataset

ChIP K-562 ENCSR249BHQ.ZNF592.K-562 53 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap