chr11 : 62,561,760 – 62,562,358
598 bp 43 TFs 26 linked genes
This 598 bp open chromatin element is linked to 26 target genes and is bound by 43 transcription factors.
Linked Genes
26 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EEF1G 11.9 kb Distal Multiome
AHNAK 15.2 kb Distal Multiome
TUT1 29.5 kb Distal Multiome
MTA2 39.8 kb Distal Multiome
EML3 50.5 kb Distal Multiome
B3GAT3 60.0 kb Distal Multiome
GANAB 84.6 kb Distal Multiome
INTS5 91.3 kb Distal Multiome
CSKMT 103.3 kb Distal Multiome
UQCC3 109.6 kb Distal Multiome
UBXN1 117.0 kb Distal Multiome
BSCL2 145.4 kb Distal Multiome
HNRNPUL2 165.4 kb Distal Multiome
TTC9C 166.5 kb Distal Multiome
ZBTB3 192.1 kb Distal Multiome
POLR2G 199.5 kb Distal Multiome
TAF6L 209.4 kb Distal Multiome
ASRGL1 224.6 kb Distal Multiome
TMEM179B 225.4 kb Distal Multiome
TMEM223 230.0 kb Distal Multiome
NXF1 243.4 kb Distal Multiome
STX5 270.0 kb Distal Multiome
STX5-DT 270.2 kb Distal Multiome
WDR74 277.6 kb Distal Multiome
SNHG1 293.9 kb Distal Multiome
SLC3A2 294.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:62,556,760 – 62,567,358
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 389 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 590 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 118 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 161 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 139 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 450 bp overlap
ChIP DE DE-FOXA2-2 598 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 277 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 538 bp overlap
ChIP DE DE-GATA4-2 598 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 530 bp overlap
ChIP DE DE-GATA6-2 598 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 550 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 598 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 583 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 598 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 584 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 598 bp overlap
HNF4A 1 dataset
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
HOXC13 1 dataset
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 413 bp overlap
INSM1 2 datasets
Motif DE_72h DE_72h-INSM1_MA0155.1 12 bp overlap
Motif ES_0h ES_0h-INSM1_MA0155.1 12 bp overlap
JUN 3 datasets
ChIP A549 ENCFF191QZG 111 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 323 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 326 bp overlap
Lef1 1 dataset
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 304 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 314 bp overlap
ChIP hESC GSE18292.NANOG.hESC 278 bp overlap
NR1H2::RXRA 1 dataset
Motif ES_0h ES_0h-NR1H2RXRA_MA0115.1 17 bp overlap
NR2C1 2 datasets
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap
Nr1H2 2 datasets
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
POLR2A 5 datasets
ChIP GM12878 ENCFF263VRI 216 bp overlap
ChIP GM23338 ENCFF450WCS 406 bp overlap
ChIP K562 ENCFF215CWW 133 bp overlap
ChIP PFSK-1 ENCFF576NIT 340 bp overlap
ChIP Panc1 ENCFF290KAB 313 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 250 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 305 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RARA::RXRG 1 dataset
Motif ES_0h ES_0h-RARARXRG_MA1149.2 17 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RORA 1 dataset
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
RXRA 1 dataset
ChIP H1 ENCFF570NHK 201 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 334 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 361 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 374 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 293 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 311 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 135 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 299 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 108 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 343 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 395 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 277 bp overlap
ChIP WTC11 ENCFF688PEU 349 bp overlap
ZNF281 2 datasets
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 61 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 476 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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