chr11 : 57,464,333 – 57,464,559
226 bp 46 TFs 1 linked gene
This 226 bp open chromatin element is linked to RTN4RL2 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RTN4RL2 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:57,459,333 – 57,469,559
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 226 bp overlap
ChIP K562 ENCFF492SKF 136 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 120 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 58 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 164 bp overlap
ChIP K562 ENCFF343XWA 93 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 82 bp overlap
BRD4 2 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 179 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 89 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 170 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 226 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 226 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 226 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF093OYK 215 bp overlap
ChIP BLaER1 ENCFF274GAT 170 bp overlap
ChIP BLaER1 ENCFF364PUR 226 bp overlap
ChIP BLaER1 ENCFF460KDD 226 bp overlap
ChIP BLaER1 ENCFF858JKM 226 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 139 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 126 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 222 bp overlap
ChIP astrocyte ENCFF365JTP 80 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 226 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 226 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 226 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 226 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 226 bp overlap
GTF2I 2 datasets
ChIP K562 ENCFF539BYI 191 bp overlap
ChIP WTC11 ENCFF255XXZ 150 bp overlap
HDAC2 5 datasets
ChIP H1 ENCFF353UJQ 226 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 188 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 78 bp overlap
ChIP K562 ENCFF744ALD 116 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 53 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 186 bp overlap
KDM1A 10 datasets
ChIP H1 ENCFF696SGD 80 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 73 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 59 bp overlap
ChIP K562 ENCFF128TYE 108 bp overlap
ChIP K562 ENCFF133OLU 108 bp overlap
ChIP K562 ENCFF934ZRG 177 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 117 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 111 bp overlap
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 140 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 90 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 159 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 110 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 226 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 226 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 161 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 218 bp overlap
NFXL1 1 dataset
ChIP K-562 ENCSR085DDI.NFXL1.K-562 92 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 102 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 226 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 226 bp overlap
PTBP1 2 datasets
ChIP K-562 GSE120104.PTBP1.K-562 116 bp overlap
ChIP K-562 ENCSR948KMB.PTBP1.K-562 108 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 226 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 102 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 145 bp overlap
ChIP K562 ENCFF248CGR 82 bp overlap
ChIP K562 ENCFF957ORK 82 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 76 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 226 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 205 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 220 bp overlap
SMARCA5 3 datasets
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 56 bp overlap
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 92 bp overlap
ChIP K562 ENCFF936KHY 137 bp overlap
SPI1 13 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 115 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 205 bp overlap
ChIP HL-60 ENCFF645GBT 135 bp overlap
ChIP K562 ENCFF410ORC 130 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 112 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 108 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 102 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 125 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 92 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 112 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 120 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 146 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 59 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 226 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 226 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 160 bp overlap
XRCC5 2 datasets
ChIP K-562 GSE120104.XRCC5.K-562 78 bp overlap
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 59 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 226 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 226 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 226 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 226 bp overlap
ZFP36 4 datasets
ChIP A-549 ENCSR294JWV.ZFP36.A-549 98 bp overlap
ChIP A549 ENCFF505LUC 67 bp overlap
ChIP GM12878 ENCFF234WRG 79 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 131 bp overlap
ZMYM3 5 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 63 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 78 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 165 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 128 bp overlap
ChIP K562 ENCFF361LXT 73 bp overlap
ZNF143 1 dataset
ChIP K-562 ENCSR000EGP.ZNF143.K-562 65 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 113 bp overlap
ZNF768 3 datasets
ChIP HEK293 ENCFF579QSI 127 bp overlap
ChIP HEK293 ENCSR070HWF.ZNF768.HEK293 99 bp overlap
ChIP HepG2 ENCFF388QCK 104 bp overlap
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