chr10 : 96,324,253 – 96,324,992
739 bp 66 TFs 3 linked genes
This 739 bp open chromatin element is linked to ZNF518A, TM9SF3, and CCNJ and is bound by 66 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZNF518A 194.9 kb Distal Multiome
TM9SF3 262.4 kb Distal Multiome
CCNJ 281.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:96,319,253 – 96,329,992
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 237 bp overlap
BHLHE22 1 dataset
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
Bach1::Mafk 2 datasets
Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
Bhlha15 1 dataset
Motif DE_72h DE_72h-Bhlha15_MA1472.3 8 bp overlap
CTCF 76 datasets
ChIP B-cell ENCSR000AUV.CTCF.B-cell 221 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 152 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 224 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 201 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 178 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 165 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 236 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 108 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 108 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 124 bp overlap
ChIP GM12878 ENCFF217EAX 357 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 296 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 195 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 96 bp overlap
ChIP GM13976 ENCFF896BYT 161 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 118 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 468 bp overlap
ChIP GM23338 ENCFF772DML 173 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 202 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 137 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 447 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 326 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 188 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 148 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 149 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 282 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 297 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 181 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 152 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 119 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 144 bp overlap
ChIP OCI-LY1 ENCFF455ESK 451 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 183 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 517 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 335 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 312 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 353 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 416 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 149 bp overlap
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP Peyer's patch ENCFF828IDE 341 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 215 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 177 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 131 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 561 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 189 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 221 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 175 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 121 bp overlap
ChIP endodermal cell ENCFF471YCZ 141 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 244 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 152 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 161 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 192 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 208 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 190 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 113 bp overlap
ChIP spleen ENCSR000DNI.CTCF.spleen 102 bp overlap
DMRTC2 1 dataset
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 225 bp overlap
ERF::NHLH1 1 dataset
Motif DE_72h DE_72h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 234 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 198 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_72h DE_72h-ETV2FIGLA_MA1941.2 13 bp overlap
EZH2 4 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 584 bp overlap
ChIP HeLa-S3 ENCFF318LHU 216 bp overlap
ChIP HeLa-S3 ENCFF318LHU 446 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 491 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 389 bp overlap
ChIP DE DE-FOXA2-2 420 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 581 bp overlap
ChIP DE DE-GATA4-2 607 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 576 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 303 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 528 bp overlap
ChIP DE DE-GATA6-2 626 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 643 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 516 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 628 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 531 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 587 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 672 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 195 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 544 bp overlap
ChIP foregut GSE117136.GATA6.foregut 514 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 334 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 273 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 264 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 279 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 120 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 199 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
Irf1 1 dataset
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 294 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 355 bp overlap
MAF::NFE2 2 datasets
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_72h DE_72h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_72h DE_72h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 2 datasets
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
Mafg 2 datasets
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
Motif DE_72h DE_72h-Mafg_MA0659.4 12 bp overlap
NEUROD1 1 dataset
Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_15 GSE104399.NR3C1.breast_tumor_Male_15 233 bp overlap
Neurod2 2 datasets
Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nfe2l2 2 datasets
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
Nr2e1 1 dataset
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PAX6 1 dataset
Motif DE_72h DE_72h-PAX6_MA0069.1 14 bp overlap
PBX1 1 dataset
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
Prdm4 1 dataset
Motif DE_72h DE_72h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
RAD21 24 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 126 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 315 bp overlap
ChIP H1 ENCFF698EWO 93 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 181 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 150 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 173 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 87 bp overlap
ChIP MCF-7 ENCFF694KOM 337 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 159 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 232 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 259 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 199 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 182 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 173 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 277 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 245 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 162 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 243 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 177 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 473 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 569 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 476 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 566 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 432 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 310 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 428 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 304 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 149 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 187 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 198 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 332 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 377 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
STAG1 4 datasets
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 209 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 177 bp overlap
ChIP HepG2 ENCFF843EBZ 301 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 165 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 223 bp overlap
TBX19 1 dataset
Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap
TCF7L1 1 dataset
Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 142 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 104 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 150 bp overlap
ZNF274 1 dataset
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
Zfp335 2 datasets
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
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