chr1 : 190,319,548 – 190,320,128

580 bp 97 TFs 0 linked genes

This 580 bp open chromatin element has no linked target genes and is bound by 97 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

97 transcription factors

ALX3 1 dataset

Motif DE_48h DE_48h-ALX3_MA0634.2 6 bp overlap

ARGFX 1 dataset

Motif DE_48h DE_48h-ARGFX_MA1463.2 8 bp overlap

Alx1 1 dataset

Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap

Arx 1 dataset

Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 203 bp overlap

Crx 1 dataset

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

DRGX 1 dataset

Motif DE_48h DE_48h-DRGX_MA1481.2 6 bp overlap

DUX4 1 dataset

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

DUXA 2 datasets

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap

Ddit3::Cebpa 1 dataset

Motif DE_36h DE_36h-Ddit3Cebpa_MA0019.2 10 bp overlap

Dux 2 datasets

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap

EMX1 1 dataset

Motif DE_48h DE_48h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_48h DE_48h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_48h DE_48h-EN1_MA0027.3 6 bp overlap

EN2 1 dataset

Motif DE_48h DE_48h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 269 bp overlap

ESR1_pS118 1 dataset

ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 219 bp overlap

ESX1 1 dataset

Motif DE_48h DE_48h-ESX1_MA0644.3 7 bp overlap

EVX1 1 dataset

Motif DE_48h DE_48h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_48h DE_48h-EVX2_MA0888.2 6 bp overlap

FLI1::DRGX 2 datasets

Motif DE_36h DE_36h-FLI1DRGX_MA1949.2 14 bp overlap

Motif DE_48h DE_48h-FLI1DRGX_MA1949.2 14 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 444 bp overlap

ChIP DE DE-FOXA2-2 491 bp overlap

FOXD2 2 datasets

Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap

Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap

FOXG1 2 datasets

Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap

Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap

FOXN3 2 datasets

Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap

Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap

GATA1::TAL1 1 dataset

Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 437 bp overlap

ChIP DE DE-GATA4-2 384 bp overlap

GATA6 3 datasets

ChIP DE DE-GATA6-1 430 bp overlap

ChIP DE DE-GATA6-2 361 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 500 bp overlap

GBX1 1 dataset

Motif DE_48h DE_48h-GBX1_MA0889.2 7 bp overlap

GSC 1 dataset

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

GSX1 1 dataset

Motif DE_48h DE_48h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_48h DE_48h-GSX2_MA0893.3 7 bp overlap

HOXA1 1 dataset

Motif DE_48h DE_48h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_48h DE_48h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap

HOXA5 1 dataset

Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap

HOXB1 1 dataset

Motif DE_48h DE_48h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_48h DE_48h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_48h DE_48h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_48h DE_48h-HOXB5_MA0904.3 6 bp overlap

HOXC8 1 dataset

Motif DE_48h DE_48h-HOXC8_MA1505.2 6 bp overlap

HOXD3 1 dataset

Motif DE_48h DE_48h-HOXD3_MA0912.2 8 bp overlap

ISX 1 dataset

Motif DE_48h DE_48h-ISX_MA0654.2 6 bp overlap

LBX1 1 dataset

Motif DE_48h DE_48h-LBX1_MA0618.2 7 bp overlap

LHX5 1 dataset

Motif DE_48h DE_48h-LHX5_MA1519.2 7 bp overlap

LHX6 1 dataset

Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap

LHX9 1 dataset

Motif DE_48h DE_48h-LHX9_MA0701.3 7 bp overlap

LMX1A 1 dataset

Motif DE_48h DE_48h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_48h DE_48h-LMX1B_MA0703.3 8 bp overlap

Lhx1 1 dataset

Motif DE_48h DE_48h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_48h DE_48h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_48h DE_48h-Lhx8_MA0705.2 6 bp overlap

MEIS1 2 datasets

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

MEOX1 1 dataset

Motif DE_48h DE_48h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_48h DE_48h-MEOX2_MA0706.2 7 bp overlap

MIXL1 1 dataset

Motif DE_48h DE_48h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_48h DE_48h-MNX1_MA0707.3 6 bp overlap

MZF1 1 dataset

Motif DE_36h DE_36h-MZF1_MA0056.3 8 bp overlap

NEUROD1 1 dataset

ChIP D283-Med GSE92582.NEUROD1.D283-Med 283 bp overlap

NFYA 1 dataset

Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap

NKX6-2 1 dataset

Motif DE_48h DE_48h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_48h DE_48h-NOTO_MA0710.2 7 bp overlap

OTX1 1 dataset

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap

PAX4 1 dataset

Motif DE_48h DE_48h-PAX4_MA0068.2 8 bp overlap

PDX1 1 dataset

Motif DE_48h DE_48h-PDX1_MA0132.3 6 bp overlap

PHF19 1 dataset

ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 223 bp overlap

PHOX2A 1 dataset

Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap

PITX1 1 dataset

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

PKNOX2 2 datasets

Motif DE_36h DE_36h-PKNOX2_MA0783.1 12 bp overlap

Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap

POU6F1 1 dataset

Motif DE_48h DE_48h-POU6F1_MA0628.2 6 bp overlap

POU6F2 1 dataset

Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap

PRDM9 1 dataset

Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap

PRRX1 1 dataset

Motif DE_48h DE_48h-PRRX1_MA0716.2 6 bp overlap

PRRX2 1 dataset

Motif DE_48h DE_48h-PRRX2_MA0075.4 7 bp overlap

RARA 1 dataset

Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap

RAX2 1 dataset

Motif DE_48h DE_48h-RAX2_MA0717.2 6 bp overlap

RHOXF1 1 dataset

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

RREB1 2 datasets

Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap

Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap

SHOX 1 dataset

Motif DE_48h DE_48h-SHOX_MA0630.2 6 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 206 bp overlap

SP5 1 dataset

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

Shox2 1 dataset

Motif DE_48h DE_48h-Shox2_MA0720.2 6 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 185 bp overlap

TGIF2 2 datasets

Motif DE_36h DE_36h-TGIF2_MA0797.1 12 bp overlap

Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap

TLX2 1 dataset

Motif DE_48h DE_48h-TLX2_MA1577.2 6 bp overlap

UNCX 1 dataset

Motif DE_48h DE_48h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_48h DE_48h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_48h DE_48h-VAX2_MA0723.3 6 bp overlap

VSX1 1 dataset

Motif DE_48h DE_48h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_48h DE_48h-VSX2_MA0726.2 7 bp overlap

ZKSCAN5 1 dataset

Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF281 1 dataset

Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap