chr10 : 46,396,568 – 46,397,243
675 bp 41 TFs 1 linked gene
This 675 bp open chromatin element is linked to LINC00842 and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00842 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:46,391,568 – 46,402,243
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 207 bp overlap
BCL3 2 datasets
ChIP A549 ENCFF214WKT 515 bp overlap
ChIP A549 ENCFF214WKT 394 bp overlap
BRD4 9 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 208 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 208 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 204 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 204 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 306 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 306 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 241 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 405 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 236 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 173 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 183 bp overlap
CEBPA 1 dataset
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 91 bp overlap
CEBPB 8 datasets
ChIP A549 ENCFF235AIY 175 bp overlap
ChIP A549 ENCFF781RLJ 176 bp overlap
ChIP H1 ENCFF871PTR 173 bp overlap
ChIP HeLa-S3 ENCFF722WEG 93 bp overlap
ChIP HepG2 ENCFF536NTI 150 bp overlap
ChIP IMR-90 ENCFF468UGY 110 bp overlap
ChIP K562 ENCFF189VBN 176 bp overlap
ChIP MCF-7 ENCFF772ZTQ 166 bp overlap
Cebpa 5 datasets
ChIP BLaER1 ENCFF093OYK 164 bp overlap
ChIP BLaER1 ENCFF274GAT 244 bp overlap
ChIP BLaER1 ENCFF364PUR 186 bp overlap
ChIP BLaER1 ENCFF364PUR 435 bp overlap
ChIP BLaER1 ENCFF896HSY 244 bp overlap
EP300 5 datasets
ChIP A-549 ENCSR000BPW.EP300.A-549 171 bp overlap
ChIP A549 ENCFF476KCM 445 bp overlap
ChIP A549 ENCFF476KCM 325 bp overlap
ChIP A549 ENCFF960ZEI 491 bp overlap
ChIP A549 ENCFF960ZEI 419 bp overlap
FOSL1 2 datasets
ChIP HCT116 ENCFF540ZXN 368 bp overlap
ChIP K562 ENCFF455MKD 635 bp overlap
FOSL2 2 datasets
ChIP A549 ENCFF195CES 365 bp overlap
ChIP SK-N-SH ENCFF127ZDW 285 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 298 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 287 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 292 bp overlap
ChIP DE DE-FOXA2-1 327 bp overlap
ChIP DE DE-FOXA2-2 466 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 165 bp overlap
GATA3 4 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 143 bp overlap
ChIP A549 ENCFF226FVV 421 bp overlap
ChIP A549 ENCFF226FVV 420 bp overlap
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 545 bp overlap
ChIP DE DE-GATA4-2 488 bp overlap
ChIP foregut GSE117136.GATA4.foregut 261 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 405 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 413 bp overlap
ChIP DE DE-GATA6-2 622 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 590 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 407 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 650 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 597 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 399 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 420 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 178 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 398 bp overlap
ChIP foregut GSE117136.GATA6.foregut 407 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 131 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 297 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 505 bp overlap
JUN 13 datasets
ChIP A549 ENCFF191QZG 440 bp overlap
ChIP A549 ENCFF846DUV 581 bp overlap
ChIP A549 ENCFF846DUV 486 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 647 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 316 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 675 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 675 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 637 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 462 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 481 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 435 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 195 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 199 bp overlap
JUNB 1 dataset
ChIP A549 ENCFF251BPG 501 bp overlap
JUND 1 dataset
ChIP HCT116 ENCFF748ZQX 360 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 425 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 277 bp overlap
MAX 2 datasets
ChIP A549 ENCFF310XGQ 485 bp overlap
ChIP A549 ENCFF310XGQ 420 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 130 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 190 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 492 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 190 bp overlap
SIN3A 2 datasets
ChIP A549 ENCFF752ATT 605 bp overlap
ChIP A549 ENCFF752ATT 404 bp overlap
SMAD2 1 dataset
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 273 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 279 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 395 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 274 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 443 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 487 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 481 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 278 bp overlap
SP1 2 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 203 bp overlap
ChIP HCT116 ENCFF800LBN 388 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 358 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 269 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 404 bp overlap
TEAD4 3 datasets
ChIP A549 ENCFF243FTL 277 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 477 bp overlap
ChIP HCT116 ENCFF526YYD 277 bp overlap
THRA 1 dataset
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
TP63 3 datasets
ChIP SUIT-2 GSE115461.TP63.SUIT-2 331 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 194 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 173 bp overlap
YY1AP1 1 dataset
ChIP MCF-10A_DOX GSE115787.YY1AP1.MCF-10A_DOX 146 bp overlap
ZIC2 2 datasets
ChIP HEK293 ENCFF033NQQ 236 bp overlap
ChIP HEK293 ENCFF033NQQ 459 bp overlap
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