chr9 : 105,515,573 – 105,516,114

541 bp 58 TFs 1 linked gene

This 541 bp open chromatin element is linked to RALGAPA1P1 and is bound by 58 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
RALGAPA1P1		4.0 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

58 transcription factors

CBFA2T3 1 dataset

ChIP K562 ENCFF673OEZ 51 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 82 bp overlap

EGR4 1 dataset

Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 189 bp overlap

ChIP DE DE-FOXA2-2 257 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

Foxn1 2 datasets

Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap

Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap

Hand1 1 dataset

Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap

IRF3 1 dataset

Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap

KDM1A 1 dataset

ChIP K562 ENCFF128TYE 111 bp overlap

KLF10 2 datasets

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap

KLF12 2 datasets

Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap

Motif DE_24h DE_24h-KLF12_MA0742.2 9 bp overlap

KLF14 2 datasets

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap

KLF15 1 dataset

Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap

KLF16 3 datasets

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap

KLF5 3 datasets

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap

MAZ 2 datasets

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap

MGA 1 dataset

Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NR1I2 1 dataset

Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

PATZ1 3 datasets

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap

RXRA::VDR 1 dataset

Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 276 bp overlap

SP1 3 datasets

Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap

Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

SP2 2 datasets

Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap

Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap

SP3 2 datasets

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap

SP4 2 datasets

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap

SP5 2 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap

TBR1 1 dataset

Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TBX2 1 dataset

Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX21 1 dataset

Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap

TBX3 1 dataset

Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap

TBX4 1 dataset

Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

TCF12 1 dataset

ChIP K562 ENCFF931DJY 98 bp overlap

TCF3 1 dataset

ChIP K562 ENCFF319QZT 104 bp overlap

Tbx6 1 dataset

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Wt1 2 datasets

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap

YY1 2 datasets

ChIP H1 ENCFF524BTL 275 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 138 bp overlap

ZBED4 1 dataset

Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap

ZNF148 2 datasets

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap

ZNF281 4 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap

ChIP HepG2 ENCFF585QNU 210 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF530 2 datasets

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap

ZNF740 1 dataset

Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap