chr9 : 1,775,285 1,776,153
868 bp 59 TFs 0 linked genes
This 868 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:1,770,285 – 1,781,153
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 7 datasets
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 452 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 126 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 146 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 225 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 378 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 83 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 208 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 204 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 236 bp overlap
BCL6 1 dataset
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 133 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 521 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 314 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 236 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 245 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 233 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 162 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 128 bp overlap
FOXA1 13 datasets
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 215 bp overlap
ChIP LNCaP-C4-2B GSE40050.FOXA1.LNCaP-C4-2B 277 bp overlap
ChIP LNCaP-C4-2B_DHT GSE40050.FOXA1.LNCaP-C4-2B_DHT 244 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 258 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 317 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.FOXA1.LNCaP_1F5_SIFOXA1 160 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 146 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 263 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 296 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 222 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 266 bp overlap
ChIP prostate_P29 GSE130408.FOXA1.prostate_P29 277 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 259 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 868 bp overlap
ChIP DE DE-FOXA2-2 868 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 302 bp overlap
GATA2 2 datasets
ChIP VCaP GSE125236.GATA2.VCaP 258 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 270 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 868 bp overlap
ChIP DE DE-GATA4-2 868 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 358 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 269 bp overlap
ChIP DE DE-GATA6-1 376 bp overlap
ChIP DE DE-GATA6-2 868 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 476 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 350 bp overlap
ChIP H9 ERP004206.GATA6.H9 200 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 384 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 460 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 526 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HOXB13 3 datasets
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 367 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 285 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 264 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 193 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 285 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 209 bp overlap
ChIP H1 ENCFF747ZPQ 219 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 438 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 303 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 268 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 480 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 470 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 355 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 428 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 478 bp overlap
POU5F1 2 datasets
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 513 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 179 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 257 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 321 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 205 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 588 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 181 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 324 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 272 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 278 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 301 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 313 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 470 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 259 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 228 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 274 bp overlap
SPDEF 1 dataset
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 146 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 117 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 249 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 243 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 7 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 350 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 151 bp overlap
ChIP WTC11 ENCFF114TZS 333 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 297 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 148 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap