chr7:100,266,531–100,267,045

chr7 : 100,266,531 – 100,267,045

514 bp 24 TFs 24 linked genes

This 514 bp open chromatin element is linked to 24 target genes and is bound by 24 transcription factors.

Linked Genes

24 genes

Gene	Expression	Dist. to TSS	Distance	Link type
CASTOR3P		4.9 kb	Proximal	Proximity
ENSG00000291178		69.2 kb	Distal	Multiome+HiCAR
STAG3L5P		69.4 kb	Distal	Multiome+HiCAR
STAG3		89.2 kb	Distal	Multiome
GPC2		89.4 kb	Distal	Multiome
PILRB		90.6 kb	Distal	Multiome
GAL3ST4		98.2 kb	Distal	Multiome
PILRA		107.3 kb	Distal	Multiome
LAMTOR4		117.9 kb	Distal	Multiome
ENSG00000242798		139.6 kb	Distal	Multiome
CNPY4		147.1 kb	Distal	Multiome
TAF6		147.4 kb	Distal	Multiome
ZCWPW1		161.9 kb	Distal	Multiome
MEPCE		162.0 kb	Distal	Multiome
MCM7		165.4 kb	Distal	Multiome
AP4M1		165.9 kb	Distal	Multiome
PPP1R35		169.7 kb	Distal	Multiome
COPS6		177.8 kb	Distal	Multiome
ZNF3		185.0 kb	Distal	Multiome
TSC22D4		212.5 kb	Distal	Multiome
ZSCAN21		217.0 kb	Distal	Multiome
NYAP1		217.2 kb	Distal	Multiome
ZKSCAN1		251.2 kb	Distal	Multiome
AGFG2		272.4 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

24 transcription factors

ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 152 bp overlap

ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 200 bp overlap

ChIP K562 ENCFF933NKI 231 bp overlap

ChIP endodermal cell ENCFF471YCZ 459 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF274GAT 307 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 274 bp overlap

ESR1 3 datasets

ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 258 bp overlap

ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 270 bp overlap

ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 221 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 355 bp overlap

ChIP DE DE-FOXA2-2 273 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 503 bp overlap

ChIP DE DE-GATA4-2 452 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 500 bp overlap

ChIP DE DE-GATA6-2 470 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 283 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 347 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 461 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 380 bp overlap

IKZF1 2 datasets

ChIP K562 ENCFF348IBL 446 bp overlap

ChIP K562 ENCFF771OHZ 174 bp overlap

IKZF3 1 dataset

ChIP HEK293 ENCFF518OXG 371 bp overlap

ChIP HAEC GSE89970.JUNB.HAEC 157 bp overlap

POU5F1 1 dataset

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 229 bp overlap

PRDM10 2 datasets

ChIP HEK293 ENCFF145WQQ 132 bp overlap

ChIP HEK293 ENCFF145WQQ 197 bp overlap

RBM25 3 datasets

ChIP K-562 ENCSR791OZM.RBM25.K-562 65 bp overlap

ChIP K562 ENCFF248CGR 67 bp overlap

ChIP K562 ENCFF957ORK 60 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 442 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 514 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 275 bp overlap

TFAP2A 1 dataset

Motif DE_48h DE_48h-TFAP2A_MA0872.1 13 bp overlap

TFAP2B 2 datasets

Motif DE_48h DE_48h-TFAP2B_MA0813.1 13 bp overlap

ChIP SK-N-SH ENCFF869XXQ 429 bp overlap

TFAP2C 2 datasets

Motif DE_48h DE_48h-TFAP2C_MA0815.1 13 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 259 bp overlap

ZFP36 1 dataset

ChIP K-562 ENCSR776CYN.ZFP36.K-562 54 bp overlap

ZIC2 2 datasets

ChIP HEK293 ENCFF033NQQ 128 bp overlap

ChIP HEK293 ENCFF033NQQ 394 bp overlap

ZNF549 2 datasets

Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap

Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap