chr6 : 49,557,381 – 49,557,797
416 bp 54 TFs 1 linked gene
This 416 bp open chromatin element is linked to C6orf141 and is bound by 54 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
C6orf141 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:49,552,381 – 49,562,797
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 70 bp overlap
AR 12 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 68 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 222 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 55 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 128 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 106 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 121 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 69 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 136 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 150 bp overlap
ChIP breast_tumor_Male_28 GSE104399.AR.breast_tumor_Male_28 118 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 157 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 90 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 169 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 329 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 358 bp overlap
BRD4 2 datasets
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 95 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 175 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl GSE63034.CREB1.LNCaP-abl 52 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 345 bp overlap
ESR1 20 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 125 bp overlap
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 135 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 87 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 104 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 150 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 113 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 146 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 131 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 240 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 127 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 124 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 393 bp overlap
ChIP breast_tumor_Male_13 GSE104399.ESR1.breast_tumor_Male_13 172 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 75 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 152 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 91 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 237 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 97 bp overlap
ChIP breast_tumor_Male_7 GSE104399.ESR1.breast_tumor_Male_7 228 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 110 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 307 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 405 bp overlap
EZH2 1 dataset
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 183 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 416 bp overlap
FOXA1 65 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 53 bp overlap
ChIP HepG2 ENCFF207NVJ 112 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 345 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 101 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 64 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 89 bp overlap
ChIP LNCaP_DMSO GSE114274.FOXA1.LNCaP_DMSO 108 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 98 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 74 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 88 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 63 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 73 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 95 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 93 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 104 bp overlap
ChIP MCF-7 GSE124667.FOXA1.MCF-7 72 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 100 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 79 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 105 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 242 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 90 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 83 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 56 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 111 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 86 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 127 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 87 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 148 bp overlap
ChIP MCF-7_shNR2F2 GSE132432.FOXA1.MCF-7_shNR2F2 107 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 106 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 387 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 91 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 107 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 73 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 85 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 66 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 59 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 53 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 110 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 91 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 142 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 81 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 197 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 192 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 107 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 171 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 392 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 133 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 170 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 91 bp overlap
ChIP breast_tumor_Female_6 GSE104399.FOXA1.breast_tumor_Female_6 74 bp overlap
ChIP breast_tumor_Male_1 GSE104399.FOXA1.breast_tumor_Male_1 136 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 416 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 98 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 416 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 154 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 112 bp overlap
ChIP breast_tumor_Male_6 GSE104399.FOXA1.breast_tumor_Male_6 144 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 223 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 131 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 357 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 101 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 112 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 96 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 82 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 416 bp overlap
ChIP DE DE-FOXA2-2 416 bp overlap
ChIP HepG2 ENCFF533COJ 126 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 416 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 179 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 125 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 125 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 288 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 366 bp overlap
ChIP DE DE-GATA4-2 416 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 165 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 271 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 386 bp overlap
ChIP DE DE-GATA6-2 416 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 416 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 416 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 416 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 416 bp overlap
HNF4A 1 dataset
ChIP liver ERP002306.HNF4A.liver 51 bp overlap
HOXB13 2 datasets
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 81 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 57 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 359 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.JUN.MCF-7_Tamoxifen 117 bp overlap
JUND 2 datasets
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 408 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 110 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 66 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 200 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 416 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 382 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 190 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 416 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 416 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 387 bp overlap
ChIP hESC GSE18292.NANOG.hESC 197 bp overlap
ChIP hESC GSE20650.NANOG.hESC 261 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 409 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 116 bp overlap
NIPBL 2 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 317 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 262 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 115 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 168 bp overlap
PGR 3 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 288 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 148 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 147 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 269 bp overlap
PML 1 dataset
ChIP MCF-7 ENCSR000BUZ.PML.MCF-7 119 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 263 bp overlap
POU5F1 9 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 386 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 335 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 350 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 265 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 141 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 404 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 416 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 288 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 191 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 304 bp overlap
PRDM14 2 datasets
ChIP hESC GSE22767.PRDM14.hESC 416 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 360 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 416 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 407 bp overlap
SIN3A 1 dataset
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 120 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 336 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 330 bp overlap
SMAD3 1 dataset
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 84 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 389 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 328 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 297 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 131 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 181 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 316 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 416 bp overlap
SUPT5H 3 datasets
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 89 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 56 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 156 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 290 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 110 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
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