chr1 : 94,572,275 94,573,057
782 bp 73 TFs 3 linked genes
This 782 bp open chromatin element is linked to F3, ABCD3, and SLC44A3 and is bound by 73 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
F3 30.9 kb Distal Multiome
ABCD3 154.2 kb Distal Multiome
SLC44A3 247.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:94,567,275 – 94,578,057
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
BCL6B 1 dataset
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 187 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 183 bp overlap
BRD9 3 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 131 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 283 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 124 bp overlap
CBX3 3 datasets
ChIP HCT-116 ENCSR000BUH.CBX3.HCT-116 202 bp overlap
ChIP HCT116 ENCFF947BOL 111 bp overlap
ChIP K562 ENCFF410AQU 291 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 205 bp overlap
CEBPA 3 datasets
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap
CEBPD 3 datasets
Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
CHAF1B 1 dataset
ChIP MOLM-13 GSE120063.CHAF1B.MOLM-13 176 bp overlap
CTCF 4 datasets
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
Motif DE_48h DE_48h-CTCF_MA1929.2 31 bp overlap
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 362 bp overlap
DPRX 3 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
DUX4 3 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
DUXA 3 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 709 bp overlap
ChIP DE DE-FOXA2-2 550 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 686 bp overlap
ChIP DE DE-GATA4-2 749 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 696 bp overlap
ChIP DE DE-GATA6-2 782 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 597 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 319 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 701 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 432 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 379 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 155 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 378 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 296 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 429 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 458 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 199 bp overlap
Jun 2 datasets
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
Motif DE_72h DE_72h-Jun_MA0489.3 8 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_RN1 GSE71739.KDM1A.SKNO-1_RN1 197 bp overlap
KLF13 2 datasets
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
MGA::EVX1 2 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
Mecom 3 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 108 bp overlap
NR2F1 4 datasets
Motif DE_36h DE_36h-NR2F1_MA0017.3 12 bp overlap
Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap
Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap
Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap
Nfat5 2 datasets
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 2 datasets
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 4 datasets
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
PAX3 3 datasets
Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
Motif DE_72h DE_72h-PAX3_MA0780.1 10 bp overlap
PHOX2A 3 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 572 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 198 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 276 bp overlap
PROP1 3 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Pax7 3 datasets
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Motif DE_72h DE_72h-Pax7_MA0680.3 10 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 218 bp overlap
RELA 3 datasets
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
RORB 4 datasets
Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap
Motif DE_48h DE_48h-RORB_MA1150.2 10 bp overlap
Motif DE_60h DE_60h-RORB_MA1150.2 10 bp overlap
Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap
Rarg 4 datasets
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 441 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 370 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 370 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 284 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 353 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 346 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 593 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 149 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 149 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 149 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 147 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 314 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 510 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
TBP 1 dataset
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
TRIM24 2 datasets
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 255 bp overlap
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 294 bp overlap
TRIM28 11 datasets
ChIP HEK293 ENCFF265CEM 420 bp overlap
ChIP HEK293 ENCFF582MWI 400 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 249 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 232 bp overlap
ChIP K-562 ENCSR474CVP.TRIM28.K-562 245 bp overlap
ChIP K-562 ENCSR000BRW.TRIM28.K-562 199 bp overlap
ChIP K562 ENCFF172UPN 275 bp overlap
ChIP K562 ENCFF429WPG 299 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 238 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 220 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 268 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tfcp2l1 4 datasets
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
USF1 2 datasets
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 145 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 123 bp overlap
VEZF1 2 datasets
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
Wt1 4 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
Yy1 2 datasets
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZIC4 4 datasets
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
Motif DE_60h DE_60h-ZIC4_MA0751.2 14 bp overlap
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 4 datasets
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF280A 1 dataset
ChIP HEK293 GSE76494.ZNF280A.HEK293 164 bp overlap
ZNF317 5 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 225 bp overlap
ChIP HEK293T GSE78099.ZNF317.HEK293T 120 bp overlap
ChIP HepG2 ENCFF018ISP 361 bp overlap
ChIP K562 ENCFF896LCF 245 bp overlap
ChIP WTC11 ENCFF537KXI 177 bp overlap
ZNF320 1 dataset
ChIP HEK293 GSE76494.ZNF320.HEK293 168 bp overlap
ZNF341 1 dataset
Motif DE_60h DE_60h-ZNF341_MA1655.2 8 bp overlap
ZNF528 3 datasets
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ZNF530 4 datasets
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 140 bp overlap
ZNF667 4 datasets
Motif DE_36h DE_36h-ZNF667_MA1984.2 11 bp overlap
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
Motif DE_72h DE_72h-ZNF667_MA1984.2 11 bp overlap
ZNF677 1 dataset
ChIP HEK293 ENCFF220HCQ 186 bp overlap
ZNF700 1 dataset
ChIP K562 ENCFF657OXY 305 bp overlap
ZNF707 2 datasets
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap