chr5 : 98,880,499 – 98,880,887
388 bp 53 TFs 1 linked gene
This 388 bp open chromatin element is linked to CHD1 and is bound by 53 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CHD1 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:98,875,499 – 98,885,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 3 datasets
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 135 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 126 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 388 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 115 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 388 bp overlap
BRD2 5 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 76 bp overlap
ChIP MDA-MB-231_BAZ2AsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA_JQ1 156 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 172 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 172 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 236 bp overlap
BRD4 6 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 150 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 150 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 58 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 193 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 58 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 193 bp overlap
BRD9 3 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 76 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 233 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 233 bp overlap
CEBPB 2 datasets
ChIP HCT116 ENCFF097OLY 68 bp overlap
ChIP K562 ENCFF584CTB 81 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 78 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 338 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 290 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 388 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 388 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 388 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 120 bp overlap
ESR1 3 datasets
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 176 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 197 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 138 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 388 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 214 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 388 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 388 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 388 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 134 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 388 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 388 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 250 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 162 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 231 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 123 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 388 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 186 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 165 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 170 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 196 bp overlap
FOXA2 14 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 324 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 103 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 244 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 174 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 388 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 388 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 174 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 388 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 388 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 388 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 388 bp overlap
ChIP DE DE-FOXA2-1 320 bp overlap
ChIP DE DE-FOXA2-2 297 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 388 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 262 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 262 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 372 bp overlap
ChIP DE DE-GATA4-2 388 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 54 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 60 bp overlap
ChIP DE DE-GATA6-2 388 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 109 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 217 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 388 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 388 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 386 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 388 bp overlap
JUN 1 dataset
ChIP Calu-3 GSE85401.JUN.Calu-3 102 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 388 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 203 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 388 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 388 bp overlap
KMT2A 2 datasets
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 151 bp overlap
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 67 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 77 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 82 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 381 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 388 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 58 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 51 bp overlap
ONECUT2 3 datasets
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 99 bp overlap
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 105 bp overlap
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 176 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 143 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 69 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 98 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 388 bp overlap
RBM22 2 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 182 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 356 bp overlap
SMAD3 4 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 223 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 261 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 388 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 388 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 95 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 146 bp overlap
SMARCD3 1 dataset
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 167 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 150 bp overlap
SOX2 1 dataset
ChIP KNS-62 GSE137459.SOX2.KNS-62 388 bp overlap
SOX4 1 dataset
ChIP MDA-MB-231_TGFb GSE104760.SOX4.MDA-MB-231_TGFb 240 bp overlap
SP1 1 dataset
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 129 bp overlap
STAT3 1 dataset
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 118 bp overlap
SUPT5H 4 datasets
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 91 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 220 bp overlap
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 388 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 235 bp overlap
TCF7L2 1 dataset
ChIP LNCaP GSE51621.TCF7L2.LNCaP 137 bp overlap
VDR 2 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.VDR.LX2_CALCIPOTRIOL_TGFB1 179 bp overlap
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 323 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 388 bp overlap
ZMYND8 1 dataset
ChIP MDA-MB-231 GSE108833.ZMYND8.MDA-MB-231 186 bp overlap
ZZZ3 1 dataset
ChIP K-562 ENCSR780BBJ.ZZZ3.K-562 388 bp overlap
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