chr5 : 63,961,667 – 63,962,197
530 bp 45 TFs 1 linked gene
This 530 bp open chromatin element is linked to HTR1A and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HTR1A 247 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:63,956,667 – 63,967,197
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 181 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 181 bp overlap
AR 3 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 369 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 156 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 151 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 114 bp overlap
BRD4 4 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 240 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.BRD4.LNCaP-clone-FGC_DHT-ABBV-075 84 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 60 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 251 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 394 bp overlap
CREB1 1 dataset
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 191 bp overlap
CTCF 3 datasets
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 308 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 274 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 530 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 255 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 105 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 398 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 224 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 1 dataset
ChIP VCaP_E2 GSE43985.ESR1.VCaP_E2 149 bp overlap
EZH2 15 datasets
ChIP H1 ENCFF232NZA 530 bp overlap
ChIP H1 ENCFF232NZA 468 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 65 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 95 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 112 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 319 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 394 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 167 bp overlap
ChIP keratinocyte ENCFF070STK 243 bp overlap
ChIP keratinocyte ENCFF070STK 448 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 213 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 422 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 398 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 388 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 199 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 202 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 256 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 100 bp overlap
JARID2 4 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 278 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 519 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 273 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 530 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 60 bp overlap
ChIP H1 ENCFF078LED 417 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 260 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 195 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 131 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 106 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 67 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 60 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 210 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 70 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 70 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 473 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 113 bp overlap
RAD21 1 dataset
ChIP liver ENCFF289RIE 180 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 375 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 315 bp overlap
REST 23 datasets
ChIP GM12878 ENCSR000BQS.REST.GM12878 142 bp overlap
ChIP GM23338 ENCFF024TCL 265 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 450 bp overlap
ChIP H1 ENCFF203SWY 367 bp overlap
ChIP H1 ENCFF429RUE 189 bp overlap
ChIP HEK293 ENCFF073DOT 397 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 335 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 174 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 164 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 92 bp overlap
ChIP Ishikawa ENCFF456OHV 369 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 342 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 163 bp overlap
ChIP MCF-7 ENCFF893RRD 345 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 303 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 194 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 326 bp overlap
ChIP PFSK-1 ENCFF845VHA 311 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 236 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 246 bp overlap
ChIP SK-N-SH ENCFF635KBN 81 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 440 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 381 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 117 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 530 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 332 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 332 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 530 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 305 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 196 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 124 bp overlap
SIRT6 2 datasets
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 81 bp overlap
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 246 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 238 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 195 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 367 bp overlap
SUZ12 2 datasets
ChIP LNCaP GSE39459.SUZ12.LNCaP 514 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 530 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 404 bp overlap
ChIP H1 ENCFF478SZO 145 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TP53 2 datasets
ChIP Calu-1_MUT8-DMSO GSE128673.TP53.Calu-1_MUT8-DMSO 274 bp overlap
ChIP WTC11 ENCFF359JCU 230 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 117 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 462 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 267 bp overlap
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