chr1 : 11,286,622 – 11,286,945
323 bp 45 TFs 0 linked genes
This 323 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:11,281,622 – 11,291,945
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 132 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 323 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 323 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 89 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 323 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 323 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 323 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 323 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 123 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 154 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 180 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 279 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 219 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 138 bp overlap
CTCF 67 datasets
ChIP 22Rv1 ENCFF466OXN 323 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 155 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 53 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 95 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 74 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 73 bp overlap
ChIP DND-41 ENCFF913MRA 110 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 167 bp overlap
ChIP GM23338 ENCFF832KWE 164 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 166 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 56 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 55 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 157 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 187 bp overlap
ChIP KMS-11 ENCFF853JKX 107 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 52 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 137 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 111 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 116 bp overlap
ChIP NPC GSE115407.CTCF.NPC 81 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 112 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 72 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 56 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 228 bp overlap
ChIP PC-9 ENCFF539ULB 240 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 119 bp overlap
ChIP RWPE1 ENCFF200GQF 96 bp overlap
ChIP RWPE2 ENCFF911IEE 55 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 145 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 94 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 50 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 249 bp overlap
ChIP VCaP ENCFF858YQT 67 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 101 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 115 bp overlap
ChIP brain ENCFF067KUH 66 bp overlap
ChIP brain ENCFF099ASU 255 bp overlap
ChIP brain ENCFF685VRG 279 bp overlap
ChIP chondrocyte ENCFF134ORZ 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 53 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF311KBD 188 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 253 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 223 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 70 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 198 bp overlap
ChIP endothelial cell ENCFF663LIE 323 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 56 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 62 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 64 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 65 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 79 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 278 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 50 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 50 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 323 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 83 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 146 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 109 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 323 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 323 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 116 bp overlap
ChIP neural cell ENCFF335ADI 88 bp overlap
ChIP neuron GSE115407.CTCF.neuron 51 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 116 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 65 bp overlap
ChIP psoas muscle ENCFF305ZVF 145 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 62 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 141 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 162 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 314 bp overlap
ChIP DE DE-FOXA2-2 323 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 323 bp overlap
ChIP DE DE-GATA4-2 323 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 323 bp overlap
ChIP DE DE-GATA6-2 323 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 323 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 323 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 127 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 237 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 70 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 264 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 118 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 323 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 323 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 323 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 250 bp overlap
ChIP hESC GSE18292.NANOG.hESC 250 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 323 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 323 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 323 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 178 bp overlap
RAD21 9 datasets
ChIP A549 ENCFF264AHX 53 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 199 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 168 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 78 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 204 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 263 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 60 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 323 bp overlap
ChIP neural cell ENCFF564MOT 99 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 117 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 184 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 313 bp overlap
ChIP H1 ENCFF896IJG 208 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 293 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 106 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 111 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 308 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 323 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 292 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 323 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 281 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 323 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 204 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 316 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 258 bp overlap
SMC1 1 dataset
ChIP HCT-116 GSE131606.SMC1.HCT-116 88 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 70 bp overlap
SMC3 4 datasets
ChIP GP5D GSE51234.SMC3.GP5D 166 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 323 bp overlap
ChIP neural cell ENCFF795YGY 130 bp overlap
ChIP neural cell ENCFF795YGY 142 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 323 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 283 bp overlap
SOX2 6 datasets
ChIP H9 GSE46837.SOX2.H9 270 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 323 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 82 bp overlap
ChIP hESC GSE18292.SOX2.hESC 229 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 323 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 206 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 295 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 283 bp overlap
SS18 2 datasets
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 64 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 126 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 295 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 109 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 254 bp overlap
Huangfu Lab · Publications · Resources · Contact