chr5 : 52,078,515 52,078,761
246 bp 56 TFs 0 linked genes
This 246 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:52,073,515 – 52,083,761
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 232 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 148 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 114 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 150 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 237 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 207 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 241 bp overlap
BRD4 3 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 215 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 246 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 162 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 246 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 194 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 246 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 246 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 151 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 246 bp overlap
CTCF 8 datasets
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 124 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 164 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 177 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 132 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 246 bp overlap
ChIP neural cell ENCFF335ADI 246 bp overlap
EP300 4 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 153 bp overlap
ChIP hESC GSE17917.EP300.hESC 246 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 246 bp overlap
ChIP neural cell ENCFF442QNK 137 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 221 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 246 bp overlap
ChIP H1 ENCFF353UJQ 246 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 246 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 223 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 195 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 162 bp overlap
ChIP H1 ENCFF747ZPQ 237 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 246 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 246 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 246 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 199 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 246 bp overlap
ChIP hESC GSE18292.NANOG.hESC 246 bp overlap
ChIP hESC GSE20650.NANOG.hESC 220 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 181 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 246 bp overlap
POU5F1 9 datasets
ChIP H1 ENCFF698ZAP 197 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 246 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 246 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 246 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 197 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 165 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 246 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 227 bp overlap
PRDM14 1 dataset
ChIP hESC GSE138674.PRDM14.hESC 149 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 240 bp overlap
ChIP H1 ENCFF967OJF 235 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 246 bp overlap
ChIP neural cell ENCFF564MOT 246 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 246 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 246 bp overlap
REST 2 datasets
Motif ES_0h ES_0h-REST_MA0138.3 20 bp overlap
ChIP neural ENCSR000BTV.REST.neural 147 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 207 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 151 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 246 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 246 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 246 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 246 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 246 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 230 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 246 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 246 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 246 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 246 bp overlap
ChIP neural cell ENCFF795YGY 246 bp overlap
SOX12 1 dataset
Motif ES_0h ES_0h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif ES_0h ES_0h-SOX14_MA1562.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 176 bp overlap
SOX18 1 dataset
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 10 datasets
ChIP H9 GSE46837.SOX2.H9 246 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 182 bp overlap
ChIP hESC GSE18292.SOX2.hESC 108 bp overlap
ChIP hESC GSE69479.SOX2.hESC 216 bp overlap
ChIP hESC GSE18292.SOX2.hESC 62 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 246 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 246 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 246 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 246 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 246 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 246 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 143 bp overlap
Sox11 1 dataset
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 246 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 235 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 182 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 152 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 169 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 174 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 196 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 191 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 214 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap