chr1 : 89,939,474 89,939,913
439 bp 42 TFs 1 linked gene
This 439 bp open chromatin element is linked to ENSG00000272672 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000272672 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:89,934,474 – 89,944,913
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP 501-mel GSE95280.ARNT.501-mel 134 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 58 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 75 bp overlap
BRD4 3 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 367 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 175 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 439 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 300 bp overlap
CDK9 2 datasets
ChIP A-375_A771726 GSE68052.CDK9.A-375_A771726 146 bp overlap
ChIP A-375_A771726 GSE57431.CDK9.A-375_A771726 131 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 290 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 439 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 242 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 129 bp overlap
ETV1 1 dataset
ChIP A-375 GSE80443.ETV1.A-375 95 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 252 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 194 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 116 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 122 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 141 bp overlap
MITF 2 datasets
ChIP 501-mel GSE61965.MITF.501-mel 57 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 54 bp overlap
MYB 1 dataset
ChIP U-937_vehicle-treated_MYB GSE98006.MYB.U-937_vehicle-treated_MYB 85 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 200 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 61 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 118 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 253 bp overlap
OLIG2 6 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 200 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 439 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 290 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 426 bp overlap
ChIP brain-prefrontal-cortex_2018001 GSE129039.OLIG2.brain-prefrontal-cortex_2018001 174 bp overlap
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 112 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 99 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 55 bp overlap
POLR2A 2 datasets
ChIP HeLa-S3 ENCFF045HUU 278 bp overlap
ChIP K562 ENCFF214YGX 198 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 76 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 95 bp overlap
PRDM15 2 datasets
ChIP Hep-G2 ENCSR011INW.PRDM15.Hep-G2 151 bp overlap
ChIP WTC11 ENCFF108TMF 198 bp overlap
RAD21 3 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 293 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 115 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 439 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 133 bp overlap
ChIP HepG2 ENCFF561IAJ 119 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 205 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 389 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 199 bp overlap
REST 2 datasets
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 155 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 71 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 137 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 350 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 439 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 76 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 211 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 218 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 72 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 235 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 176 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 138 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 208 bp overlap