chr5 : 39,023,732 – 39,024,313
581 bp 59 TFs 0 linked genes
This 581 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:39,018,732 – 39,029,313
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 141 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 469 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 73 bp overlap
ATOH7 1 dataset
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CTCF 61 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 129 bp overlap
ChIP AG04450 ENCFF116DJL 262 bp overlap
ChIP CUTLL1_DMSO GSE130140.CTCF.CUTLL1_DMSO 153 bp overlap
ChIP CUTLL1_GSI GSE130140.CTCF.CUTLL1_GSI 149 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 134 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 354 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 157 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 149 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 283 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 111 bp overlap
ChIP MCF-7 ENCFF139NQI 237 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 167 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 163 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 119 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 206 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 261 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 251 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 205 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF255MAF 362 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 328 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 365 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 342 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 357 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 317 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 320 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 377 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 435 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 184 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 183 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 139 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 195 bp overlap
ChIP gastrocnemius medialis ENCFF071DIF 346 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 252 bp overlap
ChIP gastrocnemius-medialis ENCSR594NSU.CTCF.gastrocnemius-medialis 183 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 344 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 338 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 286 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 242 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 268 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 236 bp overlap
ChIP heart left ventricle ENCFF548XHH 339 bp overlap
ChIP heart left ventricle ENCFF987PUT 294 bp overlap
ChIP heart right ventricle ENCFF027ORH 378 bp overlap
ChIP heart right ventricle ENCFF435TKW 334 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 249 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 247 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 192 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 125 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 365 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 372 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 499 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 237 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 200 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 137 bp overlap
FLI1 1 dataset
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 186 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 201 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 581 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 251 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 300 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 165 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 225 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 250 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 221 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 371 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 156 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 290 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 157 bp overlap
NR2F2 1 dataset
ChIP HeLa GSE46237.NR2F2.HeLa 151 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 215 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 327 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 243 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 221 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RAD21 3 datasets
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 340 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 137 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 139 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 266 bp overlap
RUNX2 2 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 186 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMARCA4 5 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 249 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 197 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 197 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 204 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 182 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 301 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 135 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TCF21 1 dataset
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 221 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 268 bp overlap
ZNF322 1 dataset
ChIP HEK293 GSE76494.ZNF322.HEK293 137 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF423 1 dataset
ChIP HEK293 ENCFF937QHI 335 bp overlap
ZNF549 4 datasets
ChIP HEK293 ENCFF528IUI 243 bp overlap
ChIP HEK293 ENCFF565EYY 272 bp overlap
ChIP HEK293 ENCSR185QFX.ZNF549.HEK293 234 bp overlap
ChIP HEK293 GSE76494.ZNF549.HEK293 190 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 156 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 332 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 202 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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