chr5 : 32,463,190 32,463,817
627 bp 67 TFs 5 linked genes
This 627 bp open chromatin element is linked to 5 target genes and is bound by 67 transcription factors.
Linked Genes
5 genes
Link type
Gene Expression Dist. to TSS Distance Link type
ZFR 18.9 kb Distal Multiome
SUB1 122.0 kb Distal Multiome+HiCAR
MTMR12 150.7 kb Distal Multiome
GOLPH3 289.3 kb Distal Multiome
GOLPH3-DT 289.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:32,458,190 – 32,468,817
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
Alx1 1 dataset
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 183 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 237 bp overlap
EZH2 1 dataset
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 300 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 237 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 112 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 533 bp overlap
ChIP DE DE-FOXA2-2 342 bp overlap
FOXH1 1 dataset
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
FOXP2 1 dataset
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 430 bp overlap
ChIP DE DE-GATA4-2 401 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 412 bp overlap
ChIP DE DE-GATA6-2 403 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 375 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 497 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
JUNB 2 datasets
ChIP CD4 GSE116695.JUNB.CD4 52 bp overlap
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 54 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
LIN54 1 dataset
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MYB 3 datasets
ChIP DU528 GSE94000.MYB.DU528 285 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 139 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 171 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 399 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 190 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 304 bp overlap
ChIP hESC GSE18292.NANOG.hESC 182 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 51 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 395 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RXRB 1 dataset
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 435 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 362 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 252 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 203 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 246 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 364 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF701 1 dataset
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZNF766 1 dataset
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap