chr5 : 29,226,981 29,227,577
596 bp 82 TFs 0 linked genes
This 596 bp open chromatin element has no linked target genes and is bound by 82 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:29,221,981 – 29,232,577
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 98 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 427 bp overlap
Arid3a 1 dataset
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 149 bp overlap
Bcl11B 1 dataset
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
DPRX 3 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
DUX4 4 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 499 bp overlap
DUXA 3 datasets
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dux 6 datasets
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA1 5 datasets
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 67 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 66 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 52 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 62 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 172 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 298 bp overlap
ChIP DE DE-FOXA2-1 595 bp overlap
ChIP DE DE-FOXA2-2 596 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 236 bp overlap
GATA2 3 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 297 bp overlap
GATA3 3 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 406 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 401 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 350 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 596 bp overlap
ChIP DE DE-GATA4-2 596 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 454 bp overlap
ChIP foregut GSE117136.GATA4.foregut 568 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 452 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 310 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 596 bp overlap
ChIP DE DE-GATA6-2 596 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 271 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 523 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 596 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 451 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 310 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 596 bp overlap
ChIP foregut GSE117136.GATA6.foregut 520 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 315 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 276 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 397 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HIC2 1 dataset
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
HNF1A 1 dataset
Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap
HOXA4 1 dataset
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXB13 5 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 158 bp overlap
ChIP LNCaP_EtOH_CTL GSE117304.HOXB13.LNCaP_EtOH_CTL 98 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 196 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 139 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 51 bp overlap
HOXB4 1 dataset
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_60h DE_60h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_60h DE_60h-HOXC10_MA0905.2 9 bp overlap
HOXC13 2 datasets
Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
HOXC4 1 dataset
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_60h DE_60h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_60h DE_60h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_60h DE_60h-HOXD11_MA0908.2 9 bp overlap
HOXD12 1 dataset
Motif DE_60h DE_60h-HOXD12_MA0873.2 10 bp overlap
HOXD4 1 dataset
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hoxa11 1 dataset
Motif DE_60h DE_60h-Hoxa11_MA0911.2 9 bp overlap
KLF13 3 datasets
Motif DE_48h DE_48h-KLF13_MA0657.2 17 bp overlap
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
LHX6 3 datasets
Motif DE_48h DE_48h-LHX6_MA0658.2 8 bp overlap
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
LIN54 1 dataset
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 128 bp overlap
MGA 3 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MXI1 1 dataset
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 215 bp overlap
NKX6-1 1 dataset
Motif DE_60h DE_60h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_60h DE_60h-NKX6-3_MA1530.2 8 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Nr2e3 1 dataset
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
PBX1 1 dataset
Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap
PHOX2A 3 datasets
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU6F1 1 dataset
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
PPARG 3 datasets
Motif DE_48h DE_48h-PPARG_MA0066.2 19 bp overlap
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
Motif DE_72h DE_72h-PPARG_MA0066.2 19 bp overlap
PROP1 3 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
RUNX2 1 dataset
Motif DE_60h DE_60h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 465 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 277 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 272 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 409 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Sox17 3 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox7 3 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
TBX1 3 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX20 3 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX5 3 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 133 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 99 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF652 1 dataset
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF75A 1 dataset
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap