chr1:84,611,743–84,612,319

chr1 : 84,611,743 – 84,612,319

576 bp 53 TFs 7 linked genes

This 576 bp open chromatin element is linked to 7 target genes and is bound by 53 transcription factors.

Linked Genes

7 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000289881		8.7 kb	Proximal	Proximity
ENSG00000284882		37.4 kb	Distal	Multiome
CTBS		37.6 kb	Distal	Multiome
SSX2IP		78.4 kb	Distal	Multiome
SPATA1		105.7 kb	Distal	Multiome
GNG5		105.7 kb	Distal	Multiome
RPF1		132.8 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

53 transcription factors

ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 108 bp overlap

ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 188 bp overlap

ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 159 bp overlap

ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 143 bp overlap

ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 161 bp overlap

ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 182 bp overlap

ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 255 bp overlap

ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 270 bp overlap

ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 425 bp overlap

ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 166 bp overlap

ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 414 bp overlap

ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 246 bp overlap

ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 516 bp overlap

ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 493 bp overlap

ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 514 bp overlap

ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 244 bp overlap

ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 542 bp overlap

ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 458 bp overlap

ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 229 bp overlap

ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 162 bp overlap

ChIP VCaP_R1881 GSE79128.AR.VCaP_R1881 207 bp overlap

ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 497 bp overlap

ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 522 bp overlap

ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 520 bp overlap

ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 294 bp overlap

ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 552 bp overlap

ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 522 bp overlap

ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 430 bp overlap

ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 286 bp overlap

ChIP prostate GSE56288.AR.prostate 265 bp overlap

ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 124 bp overlap

ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 262 bp overlap

ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 404 bp overlap

ChIP prostate_P27 GSE130408.AR.prostate_P27 175 bp overlap

ASH2L 1 dataset

ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 279 bp overlap

ChIP GM12878 ENCFF954REE 231 bp overlap

ChIP GM12878 ENCFF542UDC 465 bp overlap

EBF1 2 datasets

Motif DE_48h DE_48h-EBF1_MA0154.5 11 bp overlap

Motif DE_72h DE_72h-EBF1_MA0154.5 11 bp overlap

EBF3 2 datasets

Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap

Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap

EOMES 2 datasets

Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap

Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap

ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 145 bp overlap

ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 197 bp overlap

Ebf2 2 datasets

Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap

Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap

Ebf4 2 datasets

Motif DE_48h DE_48h-Ebf4_MA2122.1 11 bp overlap

Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap

FOXA1 2 datasets

ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 198 bp overlap

ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 159 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 564 bp overlap

ChIP DE DE-FOXA2-2 576 bp overlap

FOXC2 1 dataset

Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap

FOXD2 1 dataset

Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap

FOXP2 1 dataset

Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap

Foxq1 1 dataset

Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap

GABPA 1 dataset

ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 187 bp overlap

GATA1 1 dataset

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 68 bp overlap

GATA4 4 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 182 bp overlap

ChIP DE DE-GATA4-1 576 bp overlap

ChIP DE DE-GATA4-2 576 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 442 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 576 bp overlap

ChIP DE DE-GATA6-2 576 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 328 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 352 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 445 bp overlap

ChIP HepG2 ENCFF854JLR 51 bp overlap

HOXB13 3 datasets

Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap

ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 355 bp overlap

ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 154 bp overlap

ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 152 bp overlap

ChIP VCaP_DHTTHZ1 GSE125245.MED1.VCaP_DHTTHZ1 159 bp overlap

MED12 1 dataset

ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 56 bp overlap

NEUROG2 1 dataset

ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 166 bp overlap

NFKB1 3 datasets

Motif DE_48h DE_48h-NFKB1_MA0105.4 13 bp overlap

Motif DE_72h DE_72h-NFKB1_MA0105.4 13 bp overlap

ChIP L1236 GSE63736.NFKB1.L1236 230 bp overlap

NFKB2 5 datasets

Motif DE_48h DE_48h-NFKB2_MA0778.2 11 bp overlap

Motif DE_48h DE_48h-NFKB2_MA0778.2 11 bp overlap

Motif DE_72h DE_72h-NFKB2_MA0778.2 11 bp overlap

Motif DE_72h DE_72h-NFKB2_MA0778.2 11 bp overlap

ChIP L1236 GSE63736.NFKB2.L1236 219 bp overlap

NR3C1 3 datasets

ChIP IMR-90 ERP007093.NR3C1.IMR-90 347 bp overlap

ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 74 bp overlap

ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 376 bp overlap

Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap

POLR2A 1 dataset

ChIP prostate gland ENCFF881OMH 361 bp overlap

RELA 10 datasets

ChIP GM12878 ENCSR000EAG.RELA.GM12878 144 bp overlap

ChIP GM12891 ENCSR000EAI.RELA.GM12891 213 bp overlap

ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 366 bp overlap

ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 262 bp overlap

ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 336 bp overlap

ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 160 bp overlap

ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 179 bp overlap

ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 303 bp overlap

ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 296 bp overlap

ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap

ChIP L1236 GSE63736.RELB.L1236 176 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 439 bp overlap

Rhox11 1 dataset

Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 406 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 378 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 248 bp overlap

SOX13 2 datasets

Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap

Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 446 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 436 bp overlap

SOX2 2 datasets

Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap

Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap

SOX9 2 datasets

Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap

Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap

Sox3 2 datasets

Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap

Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap

TBR1 2 datasets

Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap

Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap

TBX20 2 datasets

Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap

Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap

TBX3 2 datasets

Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap

Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap

Tbx6 2 datasets

Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap

Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap

ZNF341 1 dataset

Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap

ZNF530 1 dataset

Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap

ZNF597 1 dataset

ChIP GM12878 GSE97661.ZNF597.GM12878 144 bp overlap

ZNF701 1 dataset

Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap