Enables RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Located in nucleolus. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for RPF1. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = RPF1 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of RPF1, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr1:84,479,129–84,479,871 | 193 bp | At TSS Multiome | 843 | |
| chr1:84,505,605–84,506,945 | 27.1 kb | Distal (>10kb) Multiome | 937 | |
| chr1:84,573,555–84,574,858 | 95.0 kb | Distal (>10kb) Multiome | 896 | |
| chr1:84,582,867–84,584,410 | 104.2 kb | Distal (>10kb) Multiome | 288 | |
| chr1:84,602,350–84,604,845 | 124.1 kb | Distal (>10kb) Multiome | 490 | |
| chr1:84,611,743–84,612,319 | 132.8 kb | Distal (>10kb) Multiome | 53 | |
| chr1:84,620,449–84,621,260 | 141.7 kb | Distal (>10kb) Multiome | 711 | |
| chr1:84,689,823–84,691,321 | 211.3 kb | Distal (>10kb) Multiome | 784 |
Genomic view of the RPF1 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.