chr4 : 139,988,816 139,989,040
224 bp 49 TFs 0 linked genes
This 224 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,983,816 – 139,994,040
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
AR 15 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 188 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 195 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 81 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 104 bp overlap
ChIP VCaP GSE148358.AR.VCaP 99 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 82 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 224 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 98 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 51 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 94 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 110 bp overlap
ChIP myofibroblast GSE90772.AR.myofibroblast 224 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 107 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 67 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 217 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 184 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 170 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 146 bp overlap
BRD2 3 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 224 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 224 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 207 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 193 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 224 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 76 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 148 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 148 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 163 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 163 bp overlap
CDX2 1 dataset
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 202 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 100 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 99 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 114 bp overlap
CTCF 1 dataset
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 70 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 138 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 165 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 127 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 166 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 177 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 224 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 57 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 219 bp overlap
FOXA1 5 datasets
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 60 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 60 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 163 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 174 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 114 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 160 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 155 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 169 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 136 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 206 bp overlap
ChIP DE DE-FOXA2-1 224 bp overlap
ChIP DE DE-FOXA2-2 224 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 199 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 212 bp overlap
ChIP DE DE-GATA4-1 224 bp overlap
ChIP DE DE-GATA4-2 224 bp overlap
ChIP foregut GSE117136.GATA4.foregut 224 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 224 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 195 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 174 bp overlap
ChIP DE DE-GATA6-2 224 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 216 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 224 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 224 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 224 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 224 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 224 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 224 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 224 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 224 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 224 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 69 bp overlap
HOXB13 15 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 150 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 154 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 104 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 54 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 92 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 139 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 113 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 82 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 100 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 88 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 224 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 139 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 88 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 115 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 224 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 56 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 190 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 224 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 224 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 198 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 59 bp overlap
MYCN 1 dataset
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 224 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 224 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 134 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 224 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 224 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 171 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 224 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 224 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 224 bp overlap
ChIP hESC GSE18292.NANOG.hESC 107 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 96 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 224 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 206 bp overlap
POLR2A 4 datasets
ChIP sigmoid colon ENCFF725QFT 177 bp overlap
ChIP sigmoid colon ENCFF748YVT 224 bp overlap
ChIP sigmoid colon ENCFF754JQR 88 bp overlap
ChIP transverse colon ENCFF607LKE 224 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 224 bp overlap
RUVBL2 1 dataset
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 53 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 136 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 224 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 83 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 187 bp overlap
SPI1 3 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 119 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 99 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 95 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 198 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 217 bp overlap
ChIP WTC11 ENCFF502QUV 224 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 211 bp overlap
TEAD4 5 datasets
ChIP H1 ENCFF778PAX 167 bp overlap
ChIP MDA-MB-231 GSE66081.TEAD4.MDA-MB-231 224 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 223 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 188 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 170 bp overlap
TP53 1 dataset
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 110 bp overlap
YAP1 2 datasets
ChIP MDA-MB-231 GSE66081.YAP1.MDA-MB-231 203 bp overlap
ChIP hiPSC GSE111930.YAP1.hiPSC 118 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 106 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 128 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 224 bp overlap