chr4 : 139,786,249 139,786,986
737 bp 49 TFs 0 linked genes
This 737 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,781,249 – 139,791,986
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 385 bp overlap
ARNT 1 dataset
ChIP HEK293T ENCFF302BEZ 281 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 76 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 175 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 182 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 569 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 143 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 406 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCFF003PDY 331 bp overlap
CTCF 2 datasets
ChIP neural ENCSR822CEA.CTCF.neural 123 bp overlap
ChIP neural cell ENCFF335ADI 217 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 172 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 219 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 143 bp overlap
EP300 3 datasets
ChIP neural ENCSR843ZUP.EP300.neural 635 bp overlap
ChIP neural cell ENCFF442QNK 329 bp overlap
ChIP neural cell ENCFF442QNK 376 bp overlap
FOXA1 3 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 339 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 428 bp overlap
FOXA2 6 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 148 bp overlap
ChIP DE DE-FOXA2-1 618 bp overlap
ChIP DE DE-FOXA2-2 577 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 311 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 369 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 482 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 591 bp overlap
ChIP DE DE-GATA4-2 704 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 498 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 364 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 481 bp overlap
ChIP DE DE-GATA6-2 737 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 340 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 300 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 392 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 462 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 241 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 339 bp overlap
HAND2 2 datasets
ChIP Kelly GSE94822.HAND2.Kelly 110 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 65 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 217 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 390 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR000BLF.HNF4A.Hep-G2 116 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 279 bp overlap
KLF5 3 datasets
ChIP HEK293 GSE88976.KLF5.HEK293 268 bp overlap
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 430 bp overlap
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 167 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 50 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 121 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF767LDG 117 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 271 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 186 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 164 bp overlap
ChIP K562 ENCFF047YKA 194 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 124 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 334 bp overlap
NR2F6 2 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 241 bp overlap
ChIP HepG2 ENCFF429VKC 400 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 562 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 184 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 362 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 479 bp overlap
ONECUT2 2 datasets
ChIP A-549 GSE102599.ONECUT2.A-549 737 bp overlap
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 173 bp overlap
PDX1 5 datasets
ChIP hESC GSE58685.PDX1.hESC 282 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 372 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 428 bp overlap
ChIP islet ERP001456.PDX1.islet 155 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 599 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 418 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 523 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 231 bp overlap
RARA 2 datasets
ChIP HepG2 ENCFF582XUA 159 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 193 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 256 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 244 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 291 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 164 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 261 bp overlap
ChIP neural cell ENCFF795YGY 175 bp overlap
TCF7L2 1 dataset
ChIP hepatocellular-carcinoma-cell_420 GSE138781.TCF7L2.hepatocellular-carcinoma-cell_420 177 bp overlap
TFAP4 2 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF932XOY 397 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 284 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 296 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 338 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 58 bp overlap