chr4 : 139,745,041 139,745,692
651 bp 65 TFs 0 linked genes
This 651 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,740,041 – 139,750,692
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 120 bp overlap
BARHL1 1 dataset
Motif DE_36h DE_36h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif DE_36h DE_36h-BARHL2_MA0635.2 6 bp overlap
BRD4 2 datasets
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 202 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 212 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 321 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 378 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 479 bp overlap
CTCF 4 datasets
ChIP 22Rv1 ENCFF466OXN 99 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 235 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 432 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 453 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 54 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Dmbx1 1 dataset
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
ELF1 3 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
ELF3 3 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
ESR1 1 dataset
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 231 bp overlap
ETV1 3 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
EWSR1-FLI1 3 datasets
Motif DE_36h DE_36h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Erg 2 datasets
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 434 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
GABPA 2 datasets
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA1 1 dataset
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 481 bp overlap
ChIP DE DE-GATA4-2 522 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 574 bp overlap
ChIP DE DE-GATA6-2 414 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 463 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 432 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 392 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 650 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 551 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 274 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 164 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 145 bp overlap
KLF17 2 datasets
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 247 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 308 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 323 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 422 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 248 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 323 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 209 bp overlap
NFKB2 1 dataset
Motif DE_48h DE_48h-NFKB2_MA0778.2 11 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 329 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 505 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 579 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 566 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 362 bp overlap
PRDM9 2 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
REL 1 dataset
Motif DE_48h DE_48h-REL_MA0101.1 10 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 419 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 565 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 625 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 372 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 511 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 276 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 410 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 253 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 303 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 345 bp overlap
SPI1 1 dataset
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 66 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 92 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 92 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
ZBTB26 3 datasets
Motif DE_36h DE_36h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7A 2 datasets
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
Motif DE_48h DE_48h-ZBTB7A_MA0750.3 9 bp overlap
ZNF135 1 dataset
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF257 1 dataset
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
ZNF343 1 dataset
Motif DE_48h DE_48h-ZNF343_MA1711.2 16 bp overlap
ZNF354A 1 dataset
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 467 bp overlap
ZNF677 2 datasets
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF701 3 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap