chr4 : 110,277,461 110,278,146
685 bp 80 TFs 0 linked genes
This 685 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:110,272,461 – 110,283,146
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 61 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 90 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 126 bp overlap
ASCL1 1 dataset
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Atf3 1 dataset
Motif DE_60h DE_60h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_60h DE_60h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_60h DE_60h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_60h DE_60h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_60h DE_60h-BNC2_MA1928.2 7 bp overlap
BRD4 1 dataset
ChIP KK-1_JQ1 GSE94732.BRD4.KK-1_JQ1 416 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 121 bp overlap
CTCF 1 dataset
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
CUX1 1 dataset
Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap
DUXA 1 dataset
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
E2F1 1 dataset
ChIP MM1-S GSE80661.E2F1.MM1-S 222 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 126 bp overlap
EZH2 1 dataset
ChIP ProEs GSE59087.EZH2.ProEs 108 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOS 3 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 67 bp overlap
Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 69 bp overlap
FOSL1 2 datasets
Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 307 bp overlap
FOSL2 1 dataset
Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap
FOXA1 1 dataset
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 52 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 391 bp overlap
ChIP DE DE-FOXA2-1 70 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 415 bp overlap
ChIP DE DE-GATA4-1 677 bp overlap
ChIP DE DE-GATA4-2 567 bp overlap
ChIP foregut GSE117136.GATA4.foregut 383 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 395 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 457 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 613 bp overlap
ChIP DE DE-GATA6-2 545 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 587 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 564 bp overlap
ChIP foregut GSE117136.GATA6.foregut 277 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 356 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 189 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 105 bp overlap
Isl1 1 dataset
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 149 bp overlap
Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_60h DE_60h-Jun_MA0489.3 8 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 108 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 74 bp overlap
ONECUT1 3 datasets
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
ChIP H9 ERP004206.ONECUT1.H9 220 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 375 bp overlap
ONECUT3 1 dataset
Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap
POU2F3 2 datasets
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU5F1 2 datasets
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
RBPJ 3 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 371 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 228 bp overlap
SNAI1 1 dataset
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
SNAI2 3 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 188 bp overlap
ChIP keratinocyte_LacZ_DIFF GSE55421.SNAI2.keratinocyte_LacZ_DIFF 119 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 229 bp overlap
SNAI3 1 dataset
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
TAL1 4 datasets
ChIP K-562 GSE107726.TAL1.K-562 318 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 178 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 228 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 200 bp overlap
TCF12 1 dataset
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
ChIP K-562 ENCSR970OJY.TCF3.K-562 153 bp overlap
TCF4 1 dataset
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
Motif DE_72h DE_72h-ZFP14_MA1972.1 15 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF175 1 dataset
ChIP HEK293 GSE76494.ZNF175.HEK293 124 bp overlap
ZNF213 1 dataset
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF24 2 datasets
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap