chr4 : 100,286,666 – 100,287,062

396 bp 59 TFs 0 linked genes

This 396 bp open chromatin element has no linked target genes and is bound by 59 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

59 transcription factors

ASCL1 1 dataset

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 204 bp overlap

Atoh1 2 datasets

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

Motif ES_0h ES_0h-Atoh1_MA1467.3 7 bp overlap

BRD4 1 dataset

ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 300 bp overlap

CASZ1 1 dataset

ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 203 bp overlap

CTCFL 2 datasets

Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap

Motif ES_0h ES_0h-CTCFL_MA1102.3 8 bp overlap

Crx 2 datasets

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap

DMRTA1 1 dataset

Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap

ETV5::DRGX 1 dataset

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 284 bp overlap

ChIP DE DE-FOXA2-2 96 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GSC 2 datasets

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap

HAND2 2 datasets

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap

HDAC2 2 datasets

ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 313 bp overlap

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 345 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 181 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

KLF5 2 datasets

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap

MAX 2 datasets

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 231 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 219 bp overlap

MAZ 2 datasets

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap

MED1 1 dataset

ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 173 bp overlap

MYBL1 1 dataset

Motif DE_12h DE_12h-MYBL1_MA0776.1 12 bp overlap

MYC 2 datasets

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 257 bp overlap

ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 94 bp overlap

MYOD1 2 datasets

ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 338 bp overlap

ChIP RH4 GSE83726.MYOD1.RH4 170 bp overlap

Msgn1 2 datasets

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 252 bp overlap

NEUROD1 4 datasets

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 396 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 205 bp overlap

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 4 datasets

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

Motif ES_0h ES_0h-NEUROG2_MA1642.2 7 bp overlap

ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 216 bp overlap

ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 205 bp overlap

NR4A1 1 dataset

Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap

Neurod2 2 datasets

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap

Nr2e1 1 dataset

Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap

OTX1 2 datasets

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap

PATZ1 2 datasets

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap

PITX1 2 datasets

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 191 bp overlap

RFX7 1 dataset

Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap

RHOXF1 2 datasets

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap

SIX1 1 dataset

Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap

SIX2 3 datasets

ChIP HEK GSE73865.SIX2.HEK 396 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 396 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 396 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 277 bp overlap

SMARCA2 2 datasets

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 200 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 358 bp overlap

SNAI2 1 dataset

ChIP RD GSE137168.SNAI2.RD 219 bp overlap

SOX2 1 dataset

ChIP RENVM GSE49404.SOX2.RENVM 179 bp overlap

SP4 2 datasets

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap

SP5 4 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

TAL1::TCF3 1 dataset

Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 218 bp overlap

TP53 1 dataset

ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 230 bp overlap

TWIST1 2 datasets

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap

ZEB1 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 177 bp overlap

ZNF148 2 datasets

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap

ZNF263 2 datasets

Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap

Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap

ZNF281 2 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap

ZNF530 2 datasets

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap

ZSCAN4 2 datasets

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap