chr1 : 75,133,083 75,133,477
394 bp 40 TFs 2 linked genes
This 394 bp open chromatin element is linked to LHX8-AS1 and LHX8 and is bound by 40 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LHX8-AS1 507 bp At TSS Proximity
LHX8 909 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:75,128,083 – 75,138,477
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 93 bp overlap
ChIP H1 ENCFF399KAM 394 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 304 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 286 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 206 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 394 bp overlap
BMI1 1 dataset
ChIP K-562 ENCSR782WRO.BMI1.K-562 388 bp overlap
BRD4 1 dataset
ChIP MM1-S GSE43743.BRD4.MM1-S 184 bp overlap
CBX2 2 datasets
ChIP HepG2 ENCFF838BNI 143 bp overlap
ChIP K562 ENCFF578AQI 355 bp overlap
CBX8 3 datasets
ChIP H1 ENCFF095JHA 260 bp overlap
ChIP H1 ENCFF095JHA 394 bp overlap
ChIP K562 ENCFF485TBL 178 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 266 bp overlap
CTCF 20 datasets
ChIP GM23338 ENCFF531QOI 285 bp overlap
ChIP GM23338 ENCFF832KWE 389 bp overlap
ChIP H9 ENCFF152GTF 310 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 241 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 189 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 195 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 164 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 174 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 99 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 212 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 116 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 218 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 139 bp overlap
ChIP endodermal cell ENCFF471YCZ 279 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 143 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 266 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 188 bp overlap
ChIP neural crest cell ENCFF182LWK 288 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 346 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 337 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 294 bp overlap
EZH2 22 datasets
ChIP A673 ENCFF790MVL 313 bp overlap
ChIP A673 ENCFF955JRZ 313 bp overlap
ChIP GM23248 ENCFF404ZHM 394 bp overlap
ChIP GM23248 ENCFF404ZHM 160 bp overlap
ChIP GM23338 ENCFF613YON 394 bp overlap
ChIP H1 ENCFF232NZA 394 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 223 bp overlap
ChIP K-562 ENCSR000AQE.EZH2.K-562 394 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 244 bp overlap
ChIP SK-N-SH ENCFF657FZK 303 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 63 bp overlap
ChIP astrocyte ENCFF365JTP 136 bp overlap
ChIP astrocyte ENCFF365JTP 343 bp overlap
ChIP astrocyte ENCFF365JTP 394 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 378 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 340 bp overlap
ChIP hepatocyte ENCFF118DKH 215 bp overlap
ChIP hepatocyte ENCFF552DZB 394 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 197 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 394 bp overlap
ChIP neural progenitor cell ENCFF018MKA 394 bp overlap
ChIP neural progenitor cell ENCFF472NFV 394 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 243 bp overlap
ChIP DE DE-FOXA2-2 264 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 212 bp overlap
ChIP DE DE-GATA4-2 321 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 128 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 187 bp overlap
ChIP DE DE-GATA6-2 340 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 382 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 170 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 394 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 394 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 214 bp overlap
ChIP foregut GSE117136.GATA6.foregut 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 374 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 246 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 117 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 299 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 262 bp overlap
MYOG 1 dataset
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 149 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 146 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 394 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 172 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 264 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 188 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
RING1 2 datasets
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 241 bp overlap
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 66 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 394 bp overlap
ChIP HMELBRAF_OVER GSE51929.RNF2.HMELBRAF_OVER 207 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 72 bp overlap
ChIP K-562 ENCSR138FUZ.RNF2.K-562 386 bp overlap
ChIP K562 ENCFF022XJR 168 bp overlap
ChIP K562 ENCFF061ATI 59 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 63 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 152 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 389 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 102 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 272 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 243 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 394 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 301 bp overlap
SOX2 1 dataset
ChIP glioma_stem GSE67282.SOX2.glioma_stem 202 bp overlap
SS18 4 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 195 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 311 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 394 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 261 bp overlap
STAT5A 1 dataset
ChIP MV4-11 GSE64862.STAT5A.MV4-11 143 bp overlap
SUZ12 6 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 265 bp overlap
ChIP H1 ENCFF881NFR 394 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 330 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 394 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 234 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 336 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 331 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 394 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 122 bp overlap