chr4 : 63,478,249 – 63,478,877
628 bp 52 TFs 0 linked genes
This 628 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:63,473,249 – 63,483,877
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
CEBPA 2 datasets
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPD 2 datasets
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CTCF 66 datasets
ChIP 22Rv1 ENCFF466OXN 622 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 305 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 275 bp overlap
ChIP A549 ENCFF034FVO 331 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 305 bp overlap
ChIP C4-2B ENCFF821XVN 439 bp overlap
ChIP Caco-2 ENCFF753NZV 445 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 194 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 171 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 237 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM12878 ENCFF485TGR 251 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 129 bp overlap
ChIP GM23338 ENCFF531QOI 220 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GM23338 ENCFF832KWE 597 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP H9 ENCFF152GTF 297 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 204 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 186 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 361 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 213 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 190 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 298 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 287 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 101 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 184 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 220 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 268 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 173 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 136 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 167 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 112 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 116 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 156 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 145 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 144 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 149 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 124 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 146 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 149 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 129 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 555 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 274 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 91 bp overlap
ChIP SK-N-SH ENCFF575DMG 188 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 327 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 110 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 337 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 118 bp overlap
ChIP endodermal cell ENCFF471YCZ 227 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 197 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 259 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 387 bp overlap
ChIP BLaER1 ENCFF460KDD 280 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
FOSL2 2 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2_MA0478.2 10 bp overlap
FOXA1 2 datasets
ChIP MCF-7 ENCFF465LTH 178 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 259 bp overlap
GATA6 1 dataset
ChIP DE_D1 S41-DE-d1-GATA6-exp2 72 bp overlap
GLIS1 2 datasets
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
Motif ES_0h ES_0h-GLIS1_MA0735.2 15 bp overlap
GLIS3 2 datasets
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
Motif ES_0h ES_0h-GLIS3_MA0737.1 14 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
JUN 2 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYB 2 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYC 2 datasets
ChIP U2OS_Doxy GSE77356.MYC.U2OS_Doxy 89 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 108 bp overlap
NFIA 2 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif ES_0h ES_0h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif ES_0h ES_0h-NFIX_MA0671.2 6 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Plagl1 4 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 192 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
RORB 2 datasets
Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap
Motif ES_0h ES_0h-RORB_MA1150.2 10 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SOX2 1 dataset
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 117 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
ZBTB33 2 datasets
ChIP GM12878 ENCFF818EFA 208 bp overlap
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 364 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF707 2 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 69 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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