chr4 : 13,539,011 13,539,477
466 bp 44 TFs 3 linked genes
This 466 bp open chromatin element is linked to NKX3-2, LINC01097, and LINC01096 and is bound by 44 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
NKX3-2 5.0 kb Proximal Proximity
LINC01097 7.6 kb Proximal Proximity
LINC01096 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:13,534,011 – 13,544,477
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 183 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 194 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 334 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 466 bp overlap
BRD4 2 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 320 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 107 bp overlap
CBX2 2 datasets
ChIP HepG2 ENCFF838BNI 364 bp overlap
ChIP HepG2 ENCFF838BNI 136 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 393 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 279 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 190 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 225 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
EZH2 24 datasets
ChIP GM23248 ENCFF506FWX 221 bp overlap
ChIP GM23338 ENCFF613YON 466 bp overlap
ChIP GM23338 ENCFF886DXX 466 bp overlap
ChIP H1 ENCFF232NZA 466 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 424 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 265 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 421 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 266 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 307 bp overlap
ChIP astrocyte ENCFF365JTP 466 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 173 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 105 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 466 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 466 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 165 bp overlap
ChIP hepatocyte ENCFF552DZB 466 bp overlap
ChIP keratinocyte ENCFF070STK 466 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 375 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 198 bp overlap
ChIP neural cell ENCFF610EPB 348 bp overlap
ChIP neural progenitor cell ENCFF018MKA 466 bp overlap
ChIP neural progenitor cell ENCFF472NFV 466 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 272 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 393 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 213 bp overlap
HINFP 1 dataset
Motif DE_12h DE_12h-HINFP_MA0131.3 8 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 202 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 202 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 256 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 327 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 252 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 188 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 211 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 296 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 159 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 466 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 125 bp overlap
PLAGL2 1 dataset
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 466 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 466 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 285 bp overlap
PRDM1 3 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
ChIP HEK293 ENCFF302TBP 96 bp overlap
ChIP HEK293 GSE76494.PRDM1.HEK293 73 bp overlap
SMC1A 1 dataset
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 126 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 326 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 162 bp overlap
SUZ12 1 dataset
ChIP H1 ENCFF881NFR 466 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 466 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 113 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 264 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF524 1 dataset
Motif DE_12h DE_12h-ZNF524_MA2096.1 9 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap