chr3 : 194,006,200 194,006,424
224 bp 84 TFs 1 linked gene
This 224 bp open chromatin element is linked to LINC02026 and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02026 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:194,001,200 – 194,011,424
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 224 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 188 bp overlap
CTCF 86 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 224 bp overlap
ChIP A673 ENCFF123WOM 224 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 136 bp overlap
ChIP Calu3 ENCFF526MDS 224 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 153 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 165 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 163 bp overlap
ChIP GM12872 ENCFF697BYI 224 bp overlap
ChIP GM12873 ENCFF711LOS 224 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 132 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 107 bp overlap
ChIP H1 ENCFF764RHO 224 bp overlap
ChIP H9 ENCFF152GTF 175 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 224 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 224 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 197 bp overlap
ChIP HCT116 ENCFF003KHP 224 bp overlap
ChIP HCT116 ENCFF209YMI 224 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 83 bp overlap
ChIP HEC-1-B_F-mutation GSE140868.CTCF.HEC-1-B_F-mutation 65 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 97 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 57 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 212 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 150 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 140 bp overlap
ChIP HFFc6 ENCFF005CJI 224 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 110 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 142 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 142 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 222 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 120 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 224 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 224 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 224 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 128 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 119 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 179 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 112 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 113 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 87 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 184 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 113 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 134 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 224 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 189 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 163 bp overlap
ChIP K562 ENCFF400DFR 191 bp overlap
ChIP Loucy ENCFF359TVQ 224 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 224 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 161 bp overlap
ChIP MCF-7 ENCFF139NQI 223 bp overlap
ChIP MCF-7 ENCFF210JUZ 224 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 224 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 163 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 224 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 120 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 224 bp overlap
ChIP PC-9 ENCFF539ULB 224 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 169 bp overlap
ChIP brain ENCFF163BBN 224 bp overlap
ChIP brain ENCFF163BBN 224 bp overlap
ChIP brain ENCFF685VRG 224 bp overlap
ChIP brain ENCFF685VRG 224 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 224 bp overlap
ChIP cardiac_right-atrium-auricular-region ENCSR066GBX.CTCF.cardiac_right-atrium-auricular-region 222 bp overlap
ChIP chondrocyte ENCFF134ORZ 224 bp overlap
ChIP endodermal cell ENCFF471YCZ 224 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 186 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 154 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 224 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 224 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 216 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 198 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 137 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 189 bp overlap
ChIP liver ENCFF895ERR 128 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 224 bp overlap
ChIP neural progenitor cell ENCFF420RBO 224 bp overlap
ChIP neural progenitor cell ENCFF581WPG 224 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 173 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 224 bp overlap
ChIP prostate ENCSR946MNG.CTCF.prostate 224 bp overlap
ChIP right atrium auricular region ENCFF690LBT 160 bp overlap
ChIP testis ENCSR981CID.CTCF.testis 146 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 136 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 170 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 176 bp overlap
DIDO1 1 dataset
ChIP K-562 ENCSR167JBG.DIDO1.K-562 184 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 188 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 224 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 224 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 170 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 224 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 224 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GLIS1 1 dataset
Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 219 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 175 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 224 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 224 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 182 bp overlap
ChIP hESC GSE18292.NANOG.hESC 84 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 224 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 224 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 224 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF967OJF 224 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 113 bp overlap
ChIP K562 ENCFF634XYR 224 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 224 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 224 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 183 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 190 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 207 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 224 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 216 bp overlap
ChIP DE_D1 S10-DE-d1-BAF155-exp1 209 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 212 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 224 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 224 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 224 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 127 bp overlap
STAT3 1 dataset
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 101 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 203 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 203 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 92 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 136 bp overlap
ZNF662 1 dataset
ChIP HEK293T GSE78099.ZNF662.HEK293T 180 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 148 bp overlap