chr3 : 190,032,995 190,033,311
316 bp 75 TFs 0 linked genes
This 316 bp open chromatin element has no linked target genes and is bound by 75 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:190,027,995 – 190,038,311
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 205 bp overlap
BRD4 4 datasets
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 173 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 242 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 244 bp overlap
ChIP hESC GSE33281.BRD4.hESC 121 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 156 bp overlap
CTCF 75 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 234 bp overlap
ChIP A673 ENCFF123WOM 261 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 195 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 104 bp overlap
ChIP D721Med ENCFF513FYD 118 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 316 bp overlap
ChIP GM23338 ENCFF772DML 157 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 126 bp overlap
ChIP H54 ENCFF255TVO 156 bp overlap
ChIP H9 ENCFF152GTF 316 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 121 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 121 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 118 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 267 bp overlap
ChIP HeLa-S3 ENCFF565UFR 123 bp overlap
ChIP HeLa-S3 ENCFF626XQK 168 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 115 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 156 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 166 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 143 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 138 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 216 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 83 bp overlap
ChIP HepG2 ENCFF348BUL 135 bp overlap
ChIP HepG2 ENCFF668CTD 103 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 252 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 203 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 256 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF162GNE 218 bp overlap
ChIP MCF-7 ENCFF198DQX 172 bp overlap
ChIP MCF-7 ENCFF494VXA 146 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 173 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 116 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 195 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 217 bp overlap
ChIP Panc1 ENCFF056JQX 316 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 208 bp overlap
ChIP RWPE2 ENCFF911IEE 316 bp overlap
ChIP SK-N-SH ENCFF575DMG 316 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 114 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 239 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 228 bp overlap
ChIP VCaP ENCFF858YQT 313 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 233 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 128 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 161 bp overlap
ChIP brain ENCFF163BBN 299 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 208 bp overlap
ChIP chondrocyte ENCFF134ORZ 206 bp overlap
ChIP endodermal cell ENCFF471YCZ 316 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 143 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 256 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 252 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 316 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 316 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 148 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 210 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 160 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 228 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 245 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 316 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 154 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 250 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 222 bp overlap
ChIP neural progenitor cell ENCFF420RBO 206 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 316 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 243 bp overlap
ChIP osteocyte ENCFF929FPD 282 bp overlap
CTCFL 3 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 146 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 171 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 254 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 56 bp overlap
FOXA2 1 dataset
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXP1 2 datasets
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
ChIP H9 GSE31006.FOXP1.H9 172 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
Foxj3 1 dataset
Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 197 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 185 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYCN 2 datasets
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 103 bp overlap
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 170 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
ChIP myoblast GSE50413.MYOD1.myoblast 136 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 168 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 230 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 11 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 277 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 266 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 224 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 212 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 236 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 244 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 182 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 199 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE36578.SMAD3.BG03 132 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 199 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 149 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 202 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 261 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 202 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 234 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 184 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 269 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 214 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 192 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 196 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 302 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 138 bp overlap
ZBTB33 3 datasets
ChIP GM12878 ENCFF818EFA 313 bp overlap
ChIP MCF-7 ENCFF622BUU 293 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 233 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF189 2 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 252 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 224 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF93 2 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
ZSCAN31 2 datasets
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Motif ES_0h ES_0h-ZSCAN31_MA1722.2 18 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap