chr3 : 187,360,010 187,360,938
928 bp 60 TFs 0 linked genes
This 928 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:187,355,010 – 187,365,938
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 9 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 110 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 122 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 81 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 234 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 79 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 109 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 148 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 75 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 123 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 547 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 201 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 251 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 116 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 485 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 359 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 416 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 326 bp overlap
CTCF 2 datasets
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 131 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 258 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 289 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 561 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 311 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 547 bp overlap
ChIP DE DE-FOXA2-2 597 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
GATA3 1 dataset
ChIP Kelly GSE94822.GATA3.Kelly 209 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 472 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 544 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 341 bp overlap
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 392 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 196 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 374 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 97 bp overlap
HOXC11 1 dataset
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 452 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 277 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 171 bp overlap
NANOG 12 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 204 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 843 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 294 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 144 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 137 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 897 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 736 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 248 bp overlap
ChIP hESC GSE18292.NANOG.hESC 140 bp overlap
ChIP hESC GSE20650.NANOG.hESC 193 bp overlap
ChIP hESC GSE18292.NANOG.hESC 150 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 211 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 462 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 308 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 215 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 626 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 416 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 688 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 319 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RARA 2 datasets
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 252 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 318 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 277 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 202 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 149 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 308 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 321 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 154 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 844 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 636 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 928 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 382 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 248 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 660 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 391 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 439 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 479 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 480 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 166 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 192 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 276 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 183 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 296 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap