chr3 : 173,584,643 – 173,584,759
116 bp 40 TFs 1 linked gene
This 116 bp open chromatin element is linked to NLGN1 and is bound by 40 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NLGN1 89 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:173,579,643 – 173,589,759
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 96 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 116 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 116 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 110 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 57 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 116 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 116 bp overlap
CTCF 100 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 116 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 116 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 116 bp overlap
ChIP C4-2B ENCFF821XVN 116 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 54 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 116 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 98 bp overlap
ChIP DOHH2 ENCFF637WNW 116 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 80 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 116 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 116 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 88 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 62 bp overlap
ChIP GM23338 ENCFF832KWE 116 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 83 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 73 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 116 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 64 bp overlap
ChIP HCT116 ENCFF373YMA 116 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 116 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 52 bp overlap
ChIP Loucy ENCFF359TVQ 104 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 116 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 80 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 55 bp overlap
ChIP NPC GSE115407.CTCF.NPC 71 bp overlap
ChIP OCI-LY1 ENCFF455ESK 100 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 83 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 116 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 57 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 55 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 61 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 116 bp overlap
ChIP PC-3 ENCFF487TUI 116 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 106 bp overlap
ChIP Panc1 ENCFF056JQX 116 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 116 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 84 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 116 bp overlap
ChIP T-47D_NaCl-30min GSE111923.CTCF.T-47D_NaCl-30min 66 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 90 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 116 bp overlap
ChIP WTC11 ENCFF658QVH 116 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 116 bp overlap
ChIP brain ENCFF163BBN 100 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 116 bp overlap
ChIP chondrocyte ENCFF134ORZ 53 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 106 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 69 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 111 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF258PHG 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 113 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF311KBD 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF359BHR 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 111 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 72 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF749FBO 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 116 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 111 bp overlap
ChIP endothelial cell ENCFF663LIE 116 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 116 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 95 bp overlap
ChIP esophagus squamous epithelium ENCFF700BXI 50 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 79 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 74 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 96 bp overlap
ChIP gastrocnemius medialis ENCFF071DIF 96 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 99 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 116 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 116 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 55 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 52 bp overlap
ChIP heart left ventricle ENCFF244ZHV 82 bp overlap
ChIP heart left ventricle ENCFF832OXT 114 bp overlap
ChIP heart left ventricle ENCFF888ERQ 103 bp overlap
ChIP heart right ventricle ENCFF022KFI 104 bp overlap
ChIP heart right ventricle ENCFF725NNJ 97 bp overlap
ChIP heart right ventricle ENCFF741WMU 64 bp overlap
ChIP left lung ENCFF696EWL 112 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 116 bp overlap
ChIP mucosa of descending colon ENCFF478SWS 86 bp overlap
ChIP myotube ENCFF981UHL 56 bp overlap
ChIP nephron ENCFF589HXU 116 bp overlap
ChIP nephron ENCFF972IQB 94 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 112 bp overlap
ChIP neuron GSE115407.CTCF.neuron 116 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 53 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 103 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 116 bp overlap
ChIP right atrium auricular region ENCFF696NTN 116 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 116 bp overlap
ChIP stomach ENCFF767CVC 52 bp overlap
ChIP transverse colon ENCFF454PBI 116 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 116 bp overlap
EZH2 13 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 116 bp overlap
ChIP A673 ENCFF790MVL 116 bp overlap
ChIP A673 ENCFF955JRZ 116 bp overlap
ChIP GM12878 ENCFF635TDF 116 bp overlap
ChIP PC-3 ENCFF855OUB 116 bp overlap
ChIP T98G GSE112240.EZH2.T98G 116 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 96 bp overlap
ChIP hepatocyte ENCFF552DZB 116 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 116 bp overlap
ChIP myotube ENCFF857GWB 116 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 50 bp overlap
ChIP neural progenitor cell ENCFF472NFV 67 bp overlap
ChIP skeletal muscle myoblast ENCFF338LNF 116 bp overlap
EZH2_phosphoT487 3 datasets
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 116 bp overlap
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 61 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 82 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 51 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 116 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 101 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 116 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 105 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 116 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 107 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 116 bp overlap
KMT2A 1 dataset
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 55 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2B.HEK293T_C-term_C104 66 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 116 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 89 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 116 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 106 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 116 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 116 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 116 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 77 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 116 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 75 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 56 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 89 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 66 bp overlap
SMARCA4 5 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 116 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 116 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 60 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 116 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 116 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 116 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 116 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 95 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 73 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 116 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 116 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 116 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 94 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 116 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 89 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 116 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 80 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 116 bp overlap
ZNF384 1 dataset
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 116 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 91 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 116 bp overlap
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