chr3 : 172,009,771 – 172,010,235

464 bp 60 TFs 0 linked genes

This 464 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

60 transcription factors

ATF3 1 dataset

ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 127 bp overlap

ATOH7 1 dataset

Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap

BRD4 1 dataset

ChIP HEK293T GSE51633.BRD4.HEK293T 131 bp overlap

CDX1 1 dataset

Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap

CDX2 1 dataset

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

CDX4 1 dataset

Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap

CTCF 7 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 252 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 249 bp overlap

ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 220 bp overlap

ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 296 bp overlap

ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 72 bp overlap

ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 274 bp overlap

ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 198 bp overlap

EED 2 datasets

ChIP ProEs GSE59087.EED.ProEs 180 bp overlap

ChIP ProEs GSE59087.EED.ProEs 131 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 132 bp overlap

ESR1 2 datasets

ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 111 bp overlap

ChIP T-47D ENCSR000BQD.ESR1.T-47D 115 bp overlap

ETV6 1 dataset

ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 193 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 114 bp overlap

GRHL2 1 dataset

ChIP LNCaP GSE80256.GRHL2.LNCaP 250 bp overlap

HOXA10 1 dataset

Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap

HOXB13 1 dataset

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

HOXD9 1 dataset

Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap

Hoxa13 1 dataset

Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap

Hoxd13 1 dataset

Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap

KLF11 1 dataset

Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap

KLF16 1 dataset

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

KLF4 3 datasets

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 141 bp overlap

ChIP HAP1 GSE130417.KLF4.HAP1 246 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap

KLF6 1 dataset

Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap

KLF9 2 datasets

Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 143 bp overlap

KMT2A 1 dataset

ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 157 bp overlap

MAX::MYC 1 dataset

Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap

MED25 1 dataset

ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 201 bp overlap

MXI1 1 dataset

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

MYC 1 dataset

ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 151 bp overlap

Msgn1 2 datasets

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 359 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 464 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 264 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 244 bp overlap

ChIP hESC GSE18292.NANOG.hESC 141 bp overlap

NKX2-1 1 dataset

ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 103 bp overlap

NR4A1 1 dataset

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

NRIP1 1 dataset

ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 138 bp overlap

PGR 1 dataset

ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 297 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap

POU5F1 3 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 363 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 464 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 75 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 2 datasets

ChIP H1 ENCFF698EWO 235 bp overlap

ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap

RBPJ 2 datasets

ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 418 bp overlap

ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 257 bp overlap

Rhox11 1 dataset

Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap

SMAD1 1 dataset

ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap

SMARCA4 3 datasets

ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 408 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 81 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 268 bp overlap

SMARCC1 2 datasets

ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 162 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 156 bp overlap

SOX2 4 datasets

ChIP HNSC GSE69479.SOX2.HNSC 399 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 241 bp overlap

ChIP hESC GSE18292.SOX2.hESC 76 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 464 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SPI1 1 dataset

ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 234 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap

TCF21 1 dataset

Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 287 bp overlap

ZNF143 1 dataset

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 89 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF207 1 dataset

ChIP MCF-7 ENCSR096KWU.ZNF207.MCF-7 120 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 123 bp overlap

ZSCAN16 1 dataset

Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap