chr3 : 160,485,446 – 160,485,873
427 bp 54 TFs 0 linked genes
This 427 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:160,480,446 – 160,490,873
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 70 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 157 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 64 bp overlap
CTCF 67 datasets
ChIP A-549 ENCSR000AUE.CTCF.A-549 205 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 269 bp overlap
ChIP A-549 ENCSR000BHW.CTCF.A-549 117 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 204 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 139 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 234 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG10803 ENCFF549AQK 204 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 132 bp overlap
ChIP DOHH2 ENCFF637WNW 365 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 266 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 189 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 158 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 207 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 67 bp overlap
ChIP GM06990 ENCFF471OQT 241 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 187 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 121 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 164 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 153 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 151 bp overlap
ChIP GM12878 ENCFF485TGR 223 bp overlap
ChIP GM12878 ENCFF511URZ 184 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 129 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 140 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 106 bp overlap
ChIP GM23338 ENCFF531QOI 336 bp overlap
ChIP GM23338 ENCFF772DML 200 bp overlap
ChIP H9 ENCFF152GTF 373 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 90 bp overlap
ChIP HFFc6 ENCFF005CJI 355 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 168 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 172 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 117 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 210 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 123 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 118 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 111 bp overlap
ChIP HepG2 ENCFF127KUP 222 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 292 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 90 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 168 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 316 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 233 bp overlap
ChIP SEM GSE117864.CTCF.SEM 180 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 102 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 182 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 136 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 136 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 211 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF784LWO 354 bp overlap
ChIP endodermal cell ENCFF471YCZ 295 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 218 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 193 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 199 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 236 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 151 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 130 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 145 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 190 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 169 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 244 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 207 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 98 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 251 bp overlap
ChIP BLaER1 ENCFF364PUR 229 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
E2F1 1 dataset
ChIP HepG2 ENCFF919WXY 114 bp overlap
EGR1 2 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
Motif ES_0h ES_0h-EGR1_MA0162.5 10 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 427 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
HMGXB4 2 datasets
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 230 bp overlap
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 149 bp overlap
KLF3 2 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 167 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 175 bp overlap
MAX 2 datasets
ChIP A549 ENCFF310XGQ 383 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 101 bp overlap
Mecom 2 datasets
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Motif ES_0h ES_0h-OTX2_MA0712.3 7 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POU2F1::SOX2 1 dataset
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 209 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 107 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 71 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 76 bp overlap
SREBP2 4 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 196 bp overlap
ChIP monocyte GSE129202.SREBP2.monocyte 109 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 230 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 123 bp overlap
TBX18 1 dataset
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 114 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 408 bp overlap
ChIP K562 ENCFF875HLX 390 bp overlap
ZBTB7A 1 dataset
ChIP Hep-G2 ENCSR000BQA.ZBTB7A.Hep-G2 109 bp overlap
ZBTB7B 2 datasets
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF763OCV 379 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF217 1 dataset
ChIP Hep-G2 ENCSR055FQB.ZNF217.Hep-G2 152 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF384 2 datasets
ChIP GM12878 ENCFF229VSP 321 bp overlap
ChIP GM12878 ENCFF229VSP 79 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 160 bp overlap
ZNF44 1 dataset
ChIP Hep-G2 ENCSR914HPP.ZNF44.Hep-G2 179 bp overlap
ZNF441 1 dataset
ChIP HepG2 ENCFF738UDK 335 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 144 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 368 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 172 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
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