chr3 : 153,855,837 153,856,198
361 bp 67 TFs 0 linked genes
This 361 bp open chromatin element has no linked target genes and is bound by 67 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:153,850,837 – 153,861,198
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 296 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CTCF 124 datasets
ChIP 81-3 ERP002246.CTCF.81-3 170 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 258 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 182 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 249 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 119 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 140 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 191 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 286 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 224 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 298 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 272 bp overlap
ChIP GM06990 ENCFF471OQT 281 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 243 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 227 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 246 bp overlap
ChIP GM10248 ENCFF083HVS 165 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM10266 ENCFF892KUY 177 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 120 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 138 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 187 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 214 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 234 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 308 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 204 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 188 bp overlap
ChIP GM12872 ENCFF697BYI 283 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 216 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 197 bp overlap
ChIP GM12874 ENCFF942MTD 261 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 196 bp overlap
ChIP GM12875 ENCFF081UCQ 248 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 103 bp overlap
ChIP GM12878 ENCFF217EAX 321 bp overlap
ChIP GM12878 ENCFF485TGR 251 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 361 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 212 bp overlap
ChIP GM12878 ENCSR000AKB.CTCF.GM12878 207 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 173 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 166 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 127 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 361 bp overlap
ChIP GM20000 ENCFF217HWJ 165 bp overlap
ChIP GM20000 ENCFF218HKS 165 bp overlap
ChIP GM20000 ENCSR000DLG.CTCF.GM20000 118 bp overlap
ChIP GM23338 ENCFF531QOI 338 bp overlap
ChIP GM23338 ENCFF772DML 150 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 361 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 361 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 183 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 179 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 213 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 144 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 184 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 157 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 91 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 210 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 175 bp overlap
ChIP HepG2 ENCFF757EKU 314 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 361 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 353 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 361 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 108 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 122 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 267 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 161 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 211 bp overlap
ChIP Loucy ENCFF359TVQ 361 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 310 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 282 bp overlap
ChIP MCF-7 ENCFF139NQI 272 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 201 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 197 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 214 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 168 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 254 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 215 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 193 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 165 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 221 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 350 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 322 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 244 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 361 bp overlap
ChIP RWPE2 ENCFF911IEE 361 bp overlap
ChIP RWPE2 ENCFF911IEE 361 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 361 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 228 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 209 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 206 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 304 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 251 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 172 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 177 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 142 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 121 bp overlap
ChIP endodermal cell ENCFF471YCZ 353 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 316 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 227 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 230 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 205 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 165 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 182 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 203 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 158 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 232 bp overlap
CTCFL 2 datasets
ChIP K-562 ENCSR000BNK.CTCFL.K-562 92 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 205 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 130 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 167 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 85 bp overlap
ESR1 11 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 165 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 243 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 227 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 242 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 218 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 263 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 245 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 224 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 252 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 252 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 237 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
HDAC2 3 datasets
ChIP K-562 ENCSR000BMG.HDAC2.K-562 150 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 125 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 290 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HOXC11 1 dataset
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 204 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 141 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 24 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 120 bp overlap
ChIP GM12878 ENCFF046CBW 265 bp overlap
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 174 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 168 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 300 bp overlap
ChIP H1 ENCFF698EWO 107 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 225 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 172 bp overlap
ChIP HCT116 ENCFF568PEO 277 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 164 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 93 bp overlap
ChIP MCF-7 ENCFF694KOM 317 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 229 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 194 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 158 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 157 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 234 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 201 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 196 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 149 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 361 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 361 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 144 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 2 datasets
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 89 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 124 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 177 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 271 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
STAG1 4 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 152 bp overlap
ChIP HepG2 ENCFF843EBZ 299 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 177 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 127 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 137 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 124 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 174 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap