chr1 : 63,321,080 63,321,448
368 bp 51 TFs 4 linked genes
This 368 bp open chromatin element is linked to 4 target genes and is bound by 51 transcription factors.
Linked Genes
4 genes
Distance
Gene Expression Dist. to TSS Distance Link type
FOXD3-AS1 216 bp At TSS Proximity
FOXD3 1.1 kb Proximal Proximity
LINC00466 3.9 kb Proximal Proximity
MIR6068 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:63,316,080 – 63,326,448
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 144 bp overlap
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 127 bp overlap
BRD4 3 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 147 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 66 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 187 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 170 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 305 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 321 bp overlap
CTCF 3 datasets
ChIP heart right ventricle ENCFF767XJQ 368 bp overlap
ChIP spleen ENCFF065CBS 368 bp overlap
ChIP spleen ENCFF065CBS 264 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 225 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 166 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 264 bp overlap
EZH2 13 datasets
ChIP GM23248 ENCFF404ZHM 178 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 368 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 368 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 302 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 348 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 334 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 258 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 368 bp overlap
ChIP hepatocyte ENCFF552DZB 368 bp overlap
ChIP keratinocyte ENCFF070STK 246 bp overlap
ChIP neural progenitor cell ENCFF018MKA 368 bp overlap
ChIP neural progenitor cell ENCFF472NFV 368 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 261 bp overlap
Gli2 1 dataset
Motif DE_24h DE_24h-Gli2_MA0734.4 9 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 263 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 297 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 288 bp overlap
KDM1A 1 dataset
ChIP SKNO-1_DMSO GSE71739.KDM1A.SKNO-1_DMSO 133 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF5 2 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 181 bp overlap
MAZ 1 dataset
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 329 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 66 bp overlap
NFYB 1 dataset
Motif DE_24h DE_24h-NFYB_MA0502.3 9 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 368 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 318 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 163 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 368 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 195 bp overlap
RBM39 1 dataset
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 85 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 251 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 264 bp overlap
RUNX1 1 dataset
ChIP K-562 ENCSR588AKU.RUNX1.K-562 129 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 191 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 238 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 253 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 129 bp overlap
SP4 1 dataset
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 136 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 168 bp overlap
SUZ12 2 datasets
ChIP NCCIT GSE71675.SUZ12.NCCIT 232 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 286 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 299 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 164 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 368 bp overlap
ChIP K562 ENCFF875HLX 368 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 297 bp overlap
ZNF143 2 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ChIP WTC11 ENCFF249JUK 368 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
ZNF213 1 dataset
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 104 bp overlap
ZNF675 1 dataset
Motif DE_24h DE_24h-ZNF675_MA1714.2 19 bp overlap
Zfp335 1 dataset
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Zfx 1 dataset
Motif DE_24h DE_24h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap