chr3 : 63,279,142 – 63,279,285
143 bp 41 TFs 1 linked gene
This 143 bp open chromatin element is linked to SYNPR and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SYNPR 492 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:63,274,142 – 63,284,285
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 80 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 143 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 143 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 143 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 141 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 143 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 124 bp overlap
CBX2 1 dataset
ChIP HEK293T GSE34774.CBX2.HEK293T 68 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 101 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 143 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 123 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 143 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 143 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 50 bp overlap
ESR1 4 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 72 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 143 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 126 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 143 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 24 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 143 bp overlap
ChIP GM23338 ENCFF886DXX 92 bp overlap
ChIP H1 ENCFF232NZA 143 bp overlap
ChIP H1 ENCFF232NZA 143 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 79 bp overlap
ChIP T-REx-293_K27WT GSE118954.EZH2.T-REx-293_K27WT 143 bp overlap
ChIP T-REx-293_K27WT_24h GSE118954.EZH2.T-REx-293_K27WT_24h 132 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 139 bp overlap
ChIP T98G GSE112240.EZH2.T98G 118 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 143 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 143 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 131 bp overlap
ChIP astrocyte ENCFF365JTP 107 bp overlap
ChIP astrocyte ENCFF365JTP 143 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 82 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 143 bp overlap
ChIP fibroblast of lung ENCFF479BAW 143 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 143 bp overlap
ChIP hESC GSE113817.EZH2.hESC 75 bp overlap
ChIP hepatocyte ENCFF552DZB 143 bp overlap
ChIP keratinocyte ENCFF070STK 143 bp overlap
ChIP neural progenitor cell ENCFF018MKA 143 bp overlap
ChIP neural progenitor cell ENCFF472NFV 143 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 94 bp overlap
EZH2_phosphoT487 2 datasets
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 92 bp overlap
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 143 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 114 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 76 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 107 bp overlap
HMGXB4 1 dataset
ChIP WTC11 ENCFF962POR 69 bp overlap
JARID2 4 datasets
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 143 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 143 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 143 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 143 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 143 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 143 bp overlap
KLF9 2 datasets
ChIP MCF-7 ENCFF618FCM 143 bp overlap
ChIP MCF-7 ENCFF618FCM 107 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 109 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 131 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 143 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 143 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 101 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 143 bp overlap
REST 4 datasets
ChIP H1 ENCFF429RUE 143 bp overlap
ChIP SK-N-SH ENCFF635KBN 143 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 143 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 143 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 143 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 114 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 143 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 121 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 127 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
SUZ12 6 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 143 bp overlap
ChIP H1 ENCFF881NFR 143 bp overlap
ChIP H1 ENCFF881NFR 143 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 143 bp overlap
ChIP NT2/D1 ENCFF574SXS 61 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 143 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 53 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 69 bp overlap
ZBTB48 1 dataset
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 67 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 143 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 94 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 143 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 137 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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