chr3 : 42,884,409 – 42,884,926
517 bp 59 TFs 5 linked genes
This 517 bp open chromatin element is linked to 5 target genes and is bound by 59 transcription factors.
Linked Genes
5 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HIGD1A 80.1 kb Distal Multiome
POMGNT2 221.5 kb Distal Multiome
ZBTB47-AS1 230.2 kb Distal Multiome
NKTR 283.9 kb Distal Multiome
SS18L2 293.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:42,879,409 – 42,889,926
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 184 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 407 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 79 bp overlap
ChIP BLaER1 ENCFF335XTP 277 bp overlap
ChIP BLaER1 ENCFF896HSY 280 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 207 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
FIGLA 2 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 2 datasets
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 223 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 172 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 467 bp overlap
ChIP DE DE-FOXA2-1 517 bp overlap
ChIP DE DE-FOXA2-2 517 bp overlap
FOXC2 3 datasets
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 487 bp overlap
ChIP DE DE-GATA4-2 517 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 517 bp overlap
ChIP DE DE-GATA6-2 517 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 410 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 279 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 107 bp overlap
HNF4A 1 dataset
ChIP GP5D GSE51234.HNF4A.GP5D 295 bp overlap
HOXB13 2 datasets
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 177 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 345 bp overlap
IKZF2 3 datasets
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif DE_72h DE_72h-IKZF2_MA2326.1 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 297 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 190 bp overlap
MAF 5 datasets
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
Motif DE_60h DE_60h-MAF_MA1520.2 13 bp overlap
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
Motif DE_72h DE_72h-MAF_MA1520.2 13 bp overlap
MAFA 5 datasets
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
Motif DE_60h DE_60h-MAFA_MA1521.2 13 bp overlap
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
Motif DE_72h DE_72h-MAFA_MA1521.2 13 bp overlap
MAFF 3 datasets
ChIP HepG2 ENCFF452YUT 242 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 171 bp overlap
ChIP K562 ENCFF071YKK 238 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 314 bp overlap
ChIP K562 ENCFF455EEO 132 bp overlap
MAFK 4 datasets
ChIP H1 ENCFF854XWE 248 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 160 bp overlap
ChIP HepG2 ENCFF743ZOF 219 bp overlap
ChIP K562 ENCFF380WHM 256 bp overlap
MSC 2 datasets
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MYB 3 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 181 bp overlap
MYF6 2 datasets
Motif DE_48h DE_48h-MYF6_MA0667.1 10 bp overlap
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
NFATC3 1 dataset
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 134 bp overlap
NFKB2 2 datasets
Motif DE_48h DE_48h-NFKB2_MA0778.2 11 bp overlap
Motif DE_72h DE_72h-NFKB2_MA0778.2 11 bp overlap
Nfatc1 1 dataset
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
SCRT1 1 dataset
Motif DE_72h DE_72h-SCRT1_MA0743.3 10 bp overlap
SIX2 1 dataset
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 384 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 482 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 517 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 90 bp overlap
SOX14 2 datasets
Motif DE_48h DE_48h-SOX14_MA1562.2 9 bp overlap
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 304 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 511 bp overlap
SOX18 5 datasets
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
Motif DE_48h DE_48h-SOX18_MA1563.2 8 bp overlap
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX4 5 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 277 bp overlap
ChIP K562 ENCFF059YCJ 345 bp overlap
SOX8 5 datasets
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 5 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SPI1 1 dataset
ChIP K-562 ENCSR000BGW.SPI1.K-562 103 bp overlap
SPIB 3 datasets
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
SRF 6 datasets
ChIP GM12878 ENCFF878IIX 231 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 186 bp overlap
ChIP H1 ENCFF036PEF 179 bp overlap
ChIP K-562 ENCSR582IAO.SRF.K-562 141 bp overlap
ChIP K562 ENCFF766EOO 225 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 138 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 182 bp overlap
Sox11 2 datasets
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox5 5 datasets
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Spi1 3 datasets
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap
Motif DE_72h DE_72h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
Tcf21 2 datasets
Motif DE_48h DE_48h-Tcf21_MA0832.2 10 bp overlap
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
ZEB1 2 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 234 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 151 bp overlap
ZNF701 2 datasets
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap
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