chr3 : 30,567,182 – 30,567,805
623 bp 52 TFs 0 linked genes
This 623 bp open chromatin element has no linked target genes and is bound by 52 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:30,562,182 – 30,572,805
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 110 bp overlap
CTCF 98 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 165 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 277 bp overlap
ChIP BE2C ENCFF757SRF 313 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 161 bp overlap
ChIP CD14-positive monocyte ENCFF590KQU 340 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF531QOI 207 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 263 bp overlap
ChIP H9 ENCFF152GTF 267 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 305 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 388 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 132 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 102 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 222 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 187 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 189 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 169 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 85 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF194VBQ 305 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 339 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 207 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 173 bp overlap
ChIP Loucy ENCFF359TVQ 403 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 521 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 140 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 118 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 231 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 217 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 109 bp overlap
ChIP OCI-LY1 ENCFF455ESK 447 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 388 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 391 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 297 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 273 bp overlap
ChIP PC-3 ENCFF487TUI 380 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 303 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 306 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 183 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 152 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 102 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 261 bp overlap
ChIP body of pancreas ENCFF798MEO 297 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 173 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 325 bp overlap
ChIP endodermal cell ENCFF471YCZ 319 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 197 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 321 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 263 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 258 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 316 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 243 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 151 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 305 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 423 bp overlap
ChIP heart left ventricle ENCFF185CKY 339 bp overlap
ChIP heart left ventricle ENCFF354HOQ 373 bp overlap
ChIP heart left ventricle ENCFF548XHH 332 bp overlap
ChIP heart left ventricle ENCFF832OXT 465 bp overlap
ChIP heart right ventricle ENCFF979TCT 382 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 225 bp overlap
ChIP hepatocyte ENCFF263BLJ 301 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 401 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 198 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 150 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 202 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 171 bp overlap
ChIP kidney ENCFF335EKK 185 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 358 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 265 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 259 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 394 bp overlap
ChIP liver ENCFF895ERR 247 bp overlap
ChIP liver ENCSR254YRM.CTCF.liver 172 bp overlap
ChIP liver_right-lobe-of ENCSR911GFJ.CTCF.liver_right-lobe-of 199 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 198 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 171 bp overlap
ChIP osteoblast ENCFF491ZJZ 363 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 257 bp overlap
ChIP placenta ENCFF029PHY 373 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 369 bp overlap
ChIP right lobe of liver ENCFF011NDG 187 bp overlap
ChIP right lobe of liver ENCFF250KSY 352 bp overlap
ChIP right lobe of liver ENCFF523SCB 176 bp overlap
ChIP right lobe of liver ENCFF956UTA 329 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 468 bp overlap
ChIP BLaER1 ENCFF460KDD 393 bp overlap
EGR1 1 dataset
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 245 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 55 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 396 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
LIN54 2 datasets
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 170 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
NKX2-5 1 dataset
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR1D2 1 dataset
Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
RAD21 20 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 183 bp overlap
ChIP A549 ENCFF047SFC 251 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 267 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 195 bp overlap
ChIP HCT116 ENCFF568PEO 311 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 239 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 169 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 73 bp overlap
ChIP HepG2 ENCFF963UBJ 257 bp overlap
ChIP K562 ENCFF634XYR 362 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 253 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 200 bp overlap
ChIP liver ENCFF289RIE 257 bp overlap
ChIP liver ENCFF485PAC 252 bp overlap
ChIP liver ENCFF522JHE 314 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 423 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 282 bp overlap
SMC3 2 datasets
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF745UAV 271 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 233 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 195 bp overlap
ChIP HepG2 ENCFF843EBZ 301 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Spi1 2 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 210 bp overlap
TAL1::TCF3 1 dataset
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 283 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZMYM4 2 datasets
ChIP HepG2 ENCFF567SQY 477 bp overlap
ChIP HepG2 ENCFF567SQY 476 bp overlap
ZNF140 2 datasets
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF574 2 datasets
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
Motif ES_0h ES_0h-ZNF574_MA1982.2 14 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 337 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact