chr3 : 3,309,867 3,310,525
658 bp 72 TFs 0 linked genes
This 658 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:3,304,867 – 3,315,525
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP RH4 GSE83726.BRD4.RH4 236 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 222 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 208 bp overlap
CDX2 1 dataset
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 281 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 210 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 269 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 185 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 390 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 528 bp overlap
ChIP DE DE-FOXA2-2 325 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXF2 1 dataset
Motif DE_36h DE_36h-FOXF2_MA0030.2 9 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXH1 1 dataset
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
FOXK1 1 dataset
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 406 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 329 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 243 bp overlap
ChIP DE DE-GATA4-2 192 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 197 bp overlap
ChIP DE DE-GATA6-2 248 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 632 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 397 bp overlap
HOXB13 1 dataset
Motif DE_36h DE_36h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 1 dataset
Motif DE_36h DE_36h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_36h DE_36h-Hoxd13_MA0909.4 7 bp overlap
JUND 1 dataset
Motif DE_36h DE_36h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 256 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 274 bp overlap
MEIS1 2 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 525 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 205 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 213 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 218 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 239 bp overlap
Msgn1 1 dataset
Motif DE_36h DE_36h-Msgn1_MA1524.3 10 bp overlap
PAX3 1 dataset
Motif DE_36h DE_36h-PAX3_MA1546.2 14 bp overlap
PBX3 1 dataset
Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 257 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 186 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 189 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 379 bp overlap
RARA 2 datasets
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 233 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 274 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 254 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 235 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 126 bp overlap
SMARCA4 3 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 323 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 300 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 311 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 272 bp overlap
SOX18 1 dataset
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 146 bp overlap
SOX4 1 dataset
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
ChIP RH4 GSE116344.SOX8.RH4 396 bp overlap
SOX9 1 dataset
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 270 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 259 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 197 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 250 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 144 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 348 bp overlap
SRY 1 dataset
Motif DE_36h DE_36h-SRY_MA0084.2 7 bp overlap
Sox17 1 dataset
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 283 bp overlap
Zfp335 1 dataset
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap