chr2 : 228,763,505 – 228,764,329

824 bp 80 TFs 0 linked genes

This 824 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

80 transcription factors

ASXL3 1 dataset

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 371 bp overlap

BACH1 1 dataset

Motif DE_60h DE_60h-BACH1_MA1633.2 9 bp overlap

BAP1 1 dataset

ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 659 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BRD4 2 datasets

ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 295 bp overlap

ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 325 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

Crx 3 datasets

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

Dmbx1 3 datasets

Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 377 bp overlap

EZH2 1 dataset

ChIP neural progenitor cell ENCFF018MKA 600 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 551 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 295 bp overlap

ChIP A-673_D17 GSE129155.FLI1.A-673_D17 221 bp overlap

FOS 1 dataset

Motif DE_60h DE_60h-FOS_MA0476.2 8 bp overlap

FOS::JUN 1 dataset

Motif DE_60h DE_60h-FOSJUN_MA0099.4 9 bp overlap

FOS::JUNB 1 dataset

Motif DE_60h DE_60h-FOSJUNB_MA1134.2 9 bp overlap

FOS::JUND 1 dataset

Motif DE_60h DE_60h-FOSJUND_MA1141.2 9 bp overlap

FOSB::JUNB 1 dataset

Motif DE_60h DE_60h-FOSBJUNB_MA1135.2 9 bp overlap

FOSL1 1 dataset

Motif DE_60h DE_60h-FOSL1_MA0477.3 9 bp overlap

FOSL1::JUN 1 dataset

Motif DE_60h DE_60h-FOSL1JUN_MA1128.2 9 bp overlap

FOSL1::JUNB 1 dataset

Motif DE_60h DE_60h-FOSL1JUNB_MA1137.2 9 bp overlap

FOSL2 2 datasets

Motif DE_60h DE_60h-FOSL2_MA0478.2 10 bp overlap

ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 232 bp overlap

FOSL2::JUN 1 dataset

Motif DE_60h DE_60h-FOSL2JUN_MA1130.2 9 bp overlap

FOSL2::JUNB 1 dataset

Motif DE_60h DE_60h-FOSL2JUNB_MA1138.2 9 bp overlap

FOSL2::JUND 1 dataset

Motif DE_60h DE_60h-FOSL2JUND_MA1144.2 9 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 417 bp overlap

ChIP DE DE-FOXA2-2 414 bp overlap

GATA4 3 datasets

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 60 bp overlap

ChIP DE DE-GATA4-1 428 bp overlap

ChIP DE DE-GATA4-2 501 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 352 bp overlap

ChIP DE DE-GATA6-2 512 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 462 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 278 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 443 bp overlap

ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 393 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

GSC 3 datasets

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 3 datasets

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

JDP2 1 dataset

Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap

JUN 1 dataset

ChIP DE_D2 S02-DE-d2-JUN-exp1 455 bp overlap

JUNB 1 dataset

Motif DE_60h DE_60h-JUNB_MA0490.3 9 bp overlap

JUND 1 dataset

Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

MAF::NFE2 1 dataset

Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap

MAFG::NFE2L1 1 dataset

Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap

MEIS1 1 dataset

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

MYB 1 dataset

Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NANOG 1 dataset

ChIP hESC GSE18292.NANOG.hESC 110 bp overlap

NFE2 1 dataset

Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap

NKX3-1 1 dataset

ChIP islet ERP004003.NKX3-1.islet 245 bp overlap

Nfe2l2 1 dataset

Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

OTX1 3 datasets

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

OTX2 3 datasets

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap

PDX1 3 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 222 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 139 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 219 bp overlap

PITX1 3 datasets

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX2 3 datasets

Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap

Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap

Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap

PITX3 3 datasets

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

RARA 4 datasets

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 469 bp overlap

ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 481 bp overlap

ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 614 bp overlap

ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 387 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

RHOXF1 3 datasets

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

Rarg 2 datasets

Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap

Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap

SMAD2 3 datasets

Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap

Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 214 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 443 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 240 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 443 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 160 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 180 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 239 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 419 bp overlap

SOX21 1 dataset

ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 338 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 265 bp overlap

THRA 1 dataset

Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap

ZNF136 2 datasets

Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap

Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap

ZNF24 1 dataset

Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap

ZNF701 2 datasets

Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap

Motif DE_60h DE_60h-ZNF701_MA1987.2 17 bp overlap

Zic1::Zic2 1 dataset

Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap