chr2 : 195,286,742 – 195,287,384

642 bp 91 TFs 0 linked genes

This 642 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

91 transcription factors

ALX3 1 dataset

Motif DE_36h DE_36h-ALX3_MA0634.2 6 bp overlap

ARGFX 1 dataset

Motif DE_36h DE_36h-ARGFX_MA1463.2 8 bp overlap

DMRTA1 1 dataset

Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap

DMRTA2 1 dataset

Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap

DRGX 1 dataset

Motif DE_36h DE_36h-DRGX_MA1481.2 6 bp overlap

EMX1 1 dataset

Motif DE_36h DE_36h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_36h DE_36h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_36h DE_36h-EN1_MA0027.3 6 bp overlap

EN2 1 dataset

Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 230 bp overlap

ESX1 1 dataset

Motif DE_36h DE_36h-ESX1_MA0644.3 7 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap

EVX1 1 dataset

Motif DE_36h DE_36h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_36h DE_36h-EVX2_MA0888.2 6 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 585 bp overlap

ChIP DE DE-GATA4-2 598 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 594 bp overlap

ChIP DE DE-GATA6-2 642 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 388 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 477 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 381 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 642 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 506 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 430 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 420 bp overlap

GBX1 1 dataset

Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap

GLIS2 1 dataset

Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap

GLIS3 1 dataset

Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap

GSX1 1 dataset

Motif DE_36h DE_36h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_36h DE_36h-GSX2_MA0893.3 7 bp overlap

HIC2 1 dataset

Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap

HOXA1 1 dataset

Motif DE_36h DE_36h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_36h DE_36h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap

HOXB1 1 dataset

Motif DE_36h DE_36h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_36h DE_36h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_36h DE_36h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_36h DE_36h-HOXB5_MA0904.3 6 bp overlap

HOXC8 1 dataset

Motif DE_36h DE_36h-HOXC8_MA1505.2 6 bp overlap

HOXD3 1 dataset

Motif DE_36h DE_36h-HOXD3_MA0912.2 8 bp overlap

Hnf1A 1 dataset

Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap

ISX 1 dataset

Motif DE_36h DE_36h-ISX_MA0654.2 6 bp overlap

LBX1 1 dataset

Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap

LHX5 1 dataset

Motif DE_36h DE_36h-LHX5_MA1519.2 7 bp overlap

LHX6 1 dataset

Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap

LHX9 1 dataset

Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap

LMX1A 1 dataset

Motif DE_36h DE_36h-LMX1A_MA0702.3 7 bp overlap

LMX1B 1 dataset

Motif DE_36h DE_36h-LMX1B_MA0703.3 8 bp overlap

Lef1 1 dataset

Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap

Lhx1 1 dataset

Motif DE_36h DE_36h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_36h DE_36h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_36h DE_36h-Lhx8_MA0705.2 6 bp overlap

MEOX1 1 dataset

Motif DE_36h DE_36h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_36h DE_36h-MEOX2_MA0706.2 7 bp overlap

MIXL1 1 dataset

Motif DE_36h DE_36h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_36h DE_36h-MNX1_MA0707.3 6 bp overlap

Mecom 1 dataset

Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap

NCOR2 1 dataset

ChIP LS180 GSE39277.NCOR2.LS180 100 bp overlap

NFYA 1 dataset

Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap

NKX6-2 1 dataset

Motif DE_36h DE_36h-NKX6-2_MA0675.2 6 bp overlap

NOTO 1 dataset

Motif DE_36h DE_36h-NOTO_MA0710.2 7 bp overlap

NR1D1 1 dataset

Motif DE_36h DE_36h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap

OSR2 1 dataset

Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap

PBX1 1 dataset

Motif DE_36h DE_36h-PBX1_MA0070.2 9 bp overlap

PDX1 1 dataset

Motif DE_36h DE_36h-PDX1_MA0132.3 6 bp overlap

PHOX2B 1 dataset

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

POU5F1 1 dataset

Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap

POU6F1 1 dataset

Motif DE_36h DE_36h-POU6F1_MA0628.2 6 bp overlap

POU6F2 1 dataset

Motif DE_36h DE_36h-POU6F2_MA0793.2 9 bp overlap

PRRX1 1 dataset

Motif DE_36h DE_36h-PRRX1_MA0716.2 6 bp overlap

PRRX2 1 dataset

Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap

RARA::RXRA 1 dataset

Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap

RAX2 1 dataset

Motif DE_36h DE_36h-RAX2_MA0717.2 6 bp overlap

RBPJ 1 dataset

Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap

RREB1 1 dataset

Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap

Runx1 1 dataset

Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap

SHOX 1 dataset

Motif DE_36h DE_36h-SHOX_MA0630.2 6 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 547 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 367 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 380 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 376 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 277 bp overlap

Shox2 1 dataset

Motif DE_36h DE_36h-Shox2_MA0720.2 6 bp overlap

Stat2 1 dataset

Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_36h DE_36h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap

Stat6 1 dataset

Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 240 bp overlap

TCF7 1 dataset

Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap

TEAD1 1 dataset

Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap

TLX2 1 dataset

Motif DE_36h DE_36h-TLX2_MA1577.2 6 bp overlap

UNCX 1 dataset

Motif DE_36h DE_36h-UNCX_MA0721.2 6 bp overlap

VAX1 1 dataset

Motif DE_36h DE_36h-VAX1_MA0722.2 7 bp overlap

VAX2 1 dataset

Motif DE_36h DE_36h-VAX2_MA0723.3 6 bp overlap

VSX1 1 dataset

Motif DE_36h DE_36h-VSX1_MA0725.2 7 bp overlap

VSX2 1 dataset

Motif DE_36h DE_36h-VSX2_MA0726.2 7 bp overlap

ZNF354C 1 dataset

Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap

ZNF652 1 dataset

Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap

Zfp335 1 dataset

Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap

mix-a 1 dataset

Motif DE_36h DE_36h-mix-a_MA0621.2 7 bp overlap