chr2 : 144,348,933 144,349,215
282 bp 50 TFs 0 linked genes
This 282 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:144,343,933 – 144,354,215
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 205 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 249 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 179 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA1 9 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 70 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 140 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 53 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 65 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 67 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 126 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 132 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 183 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 160 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 209 bp overlap
ChIP DE DE-FOXA2-2 63 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 145 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 151 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 282 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 207 bp overlap
ChIP DE DE-GATA6-2 259 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 243 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 282 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 282 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 253 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 222 bp overlap
HMGA1 1 dataset
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 195 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 138 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 236 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 194 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 201 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 203 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 194 bp overlap
SATB1 1 dataset
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR513XQX.SIN3A.A-549 100 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 272 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 253 bp overlap
SMAD2-3 5 datasets
ChIP HGrC1_EV-TGF GSE138496.SMAD2-3.HGrC1_EV-TGF 139 bp overlap
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 125 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 282 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 282 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 282 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 282 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 282 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 282 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 282 bp overlap
SMAD3 1 dataset
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
SMAD5 1 dataset
Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 85 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 190 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 243 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 192 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 173 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
TBX5 3 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 261 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 282 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 200 bp overlap
TEAD1 3 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 276 bp overlap
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 230 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 229 bp overlap
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 259 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 240 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 154 bp overlap
ZNF211 1 dataset
Motif DE_12h DE_12h-ZNF211_MA1974.2 10 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF558 2 datasets
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap