chr1 : 32,709,059 – 32,709,375
316 bp 61 TFs 1 linked gene
This 316 bp open chromatin element is linked to SYNC and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SYNC 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:32,704,059 – 32,714,375
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1100.3 8 bp overlap
Ascl2 1 dataset
Motif DE_24h DE_24h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 1 dataset
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 174 bp overlap
BRD4 1 dataset
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 162 bp overlap
Bhlha15 1 dataset
Motif DE_24h DE_24h-Bhlha15_MA1472.3 8 bp overlap
CCAR2 1 dataset
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 99 bp overlap
CEBPB 3 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 198 bp overlap
ChIP K562 ENCFF189VBN 249 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 203 bp overlap
CTCF 39 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 204 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 184 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 102 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 180 bp overlap
ChIP A549 ENCFF182TCQ 130 bp overlap
ChIP AG04449 ENCFF248MBD 127 bp overlap
ChIP AG09309 ENCFF478XPS 182 bp overlap
ChIP GM23338 ENCFF772DML 136 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 169 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 143 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 251 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 128 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 76 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF127KUP 163 bp overlap
ChIP HepG2 ENCFF757EKU 219 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 143 bp overlap
ChIP K562 ENCFF111MGE 134 bp overlap
ChIP MCF-7 ENCFF414SZG 110 bp overlap
ChIP MCF-7 ENCFF424NQR 136 bp overlap
ChIP MCF-7 ENCFF844STM 136 bp overlap
ChIP MCF-7 ENCFF954TUV 138 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 157 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 137 bp overlap
ChIP RWPE2 ENCFF911IEE 316 bp overlap
ChIP RWPE2 ENCFF911IEE 316 bp overlap
ChIP RWPE2 ENCFF911IEE 67 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 114 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 129 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 122 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 94 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 159 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 72 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 274 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 58 bp overlap
ChIP myotube ENCFF981UHL 235 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 172 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 128 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 196 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 296 bp overlap
ChIP BLaER1 ENCFF460KDD 316 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 109 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 258 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 278 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 52 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 313 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 146 bp overlap
MSC 1 dataset
Motif DE_24h DE_24h-MSC_MA0665.1 10 bp overlap
MYF5 1 dataset
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 115 bp overlap
MYOD1 1 dataset
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_24h DE_24h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 294 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 79 bp overlap
NFIA 1 dataset
Motif DE_24h DE_24h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_24h DE_24h-NFIX_MA0671.2 6 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 280 bp overlap
NRF1 1 dataset
ChIP Hep-G2 ENCSR853ADA.NRF1.Hep-G2 86 bp overlap
Neurod2 1 dataset
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 160 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 199 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 237 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 248 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 173 bp overlap
ChIP K562 ENCFF740YLK 138 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 192 bp overlap
Prdm14 1 dataset
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
RAD21 4 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 265 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 108 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 117 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 158 bp overlap
SMAD2 1 dataset
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 282 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 261 bp overlap
SMAD4 1 dataset
ChIP WTC11 ENCFF195KVB 316 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 275 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 249 bp overlap
SMC1A 2 datasets
ChIP A-549 GSE76893.SMC1A.A-549 115 bp overlap
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 161 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 153 bp overlap
STAG1 2 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 126 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 145 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_24h DE_24h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 144 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 144 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 143 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 102 bp overlap
ZNF384 1 dataset
ChIP K-562 ENCSR000EFP.ZNF384.K-562 114 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 316 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 310 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 169 bp overlap
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