chr2 : 43,230,588 – 43,230,755
167 bp 46 TFs 2 linked genes
This 167 bp open chromatin element is linked to LINC01126 and ZFP36L2 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01126 3.4 kb Proximal Proximity
ZFP36L2 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:43,225,588 – 43,235,755
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 109 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 149 bp overlap
ATF1 1 dataset
ChIP HepG2 ENCFF239LTQ 139 bp overlap
BACH2 1 dataset
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 167 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 150 bp overlap
BHLHE22 1 dataset
ChIP CAL-1 GSE43876.BHLHE22.CAL-1 109 bp overlap
BRD4 4 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 167 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 167 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 103 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 167 bp overlap
CTCF 122 datasets
ChIP A-549 ENCSR000AUF.CTCF.A-549 167 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 167 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 161 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 131 bp overlap
ChIP A549 ENCFF034FVO 167 bp overlap
ChIP A549 ENCFF182TCQ 167 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 143 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 167 bp overlap
ChIP Caco-2 ENCFF934QYS 167 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 117 bp overlap
ChIP DOHH2 ENCFF637WNW 167 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 167 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 154 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 167 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 167 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 148 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 167 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 130 bp overlap
ChIP GM12872 ENCFF697BYI 167 bp overlap
ChIP GM12873 ENCFF711LOS 167 bp overlap
ChIP GM12875 ENCFF081UCQ 167 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM12878 ENCFF511URZ 167 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 133 bp overlap
ChIP GM13977 ENCFF528ESQ 161 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 167 bp overlap
ChIP GM23338 ENCFF531QOI 167 bp overlap
ChIP GM23338 ENCFF772DML 162 bp overlap
ChIP H1 ENCFF230QSV 151 bp overlap
ChIP H1 ENCFF414GZI 167 bp overlap
ChIP H1 ENCFF764RHO 167 bp overlap
ChIP H9 ENCFF152GTF 167 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 167 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 167 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 167 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 167 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 167 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 125 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 167 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 167 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 127 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 135 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 128 bp overlap
ChIP HepG2 ENCFF127KUP 167 bp overlap
ChIP HepG2 ENCFF194VBQ 167 bp overlap
ChIP HepG2 ENCFF348BUL 162 bp overlap
ChIP HepG2 ENCFF757EKU 167 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 167 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 167 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 159 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 67 bp overlap
ChIP MCF-7 ENCFF198DQX 167 bp overlap
ChIP MCF-7 ENCFF414SZG 149 bp overlap
ChIP MCF-7 ENCFF424NQR 167 bp overlap
ChIP MCF-7 ENCFF494VXA 167 bp overlap
ChIP MCF-7 ENCFF844STM 167 bp overlap
ChIP MCF-7 ENCFF954TUV 167 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 167 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 137 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 128 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 116 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 115 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 167 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 167 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 167 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 167 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 167 bp overlap
ChIP Peyer's patch ENCFF701KWW 167 bp overlap
ChIP Peyer's patch ENCFF746TCR 167 bp overlap
ChIP Peyer's patch ENCFF828IDE 167 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 167 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 167 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 167 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 167 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 167 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 167 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 127 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 130 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 167 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 94 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 167 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 167 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 167 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 167 bp overlap
ChIP colon_transverse ENCSR608WPS.CTCF.colon_transverse 167 bp overlap
ChIP endodermal cell ENCFF471YCZ 167 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 107 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 110 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 119 bp overlap
ChIP esophagus squamous epithelium ENCFF700BXI 167 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 167 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 120 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 167 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 167 bp overlap
ChIP hepatocyte ENCFF263BLJ 167 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 167 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 106 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 139 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 87 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 152 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 117 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 167 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 155 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 143 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 167 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 146 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 119 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 146 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 167 bp overlap
ChIP prostate gland ENCFF655GBO 167 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 167 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 166 bp overlap
ChIP sigmoid colon ENCFF086DZH 167 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 164 bp overlap
ChIP spleen ENCFF121QGK 167 bp overlap
ChIP spleen ENCFF878IYR 167 bp overlap
ChIP transverse colon ENCFF046SHF 167 bp overlap
ChIP transverse colon ENCFF077CMZ 167 bp overlap
ChIP transverse colon ENCFF471AZS 167 bp overlap
ChIP transverse colon ENCFF749DPF 167 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 146 bp overlap
EBF1 2 datasets
ChIP MUTUL GSE75503.EBF1.MUTUL 167 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 132 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 149 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 167 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 167 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 167 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 167 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 159 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 157 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 104 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 91 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 167 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 167 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP GM12891 ENCFF012SUT 167 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 13 datasets
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 111 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 167 bp overlap
ChIP H1 ENCFF698EWO 92 bp overlap
ChIP H1 ENCFF967OJF 167 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 167 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 108 bp overlap
ChIP HepG2 ENCFF906QIS 167 bp overlap
ChIP HepG2 ENCFF963UBJ 167 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 165 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 160 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 167 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 167 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 167 bp overlap
SMC1 4 datasets
ChIP DKO GSE131606.SMC1.DKO 167 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 167 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 167 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 166 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 167 bp overlap
SMC3 2 datasets
ChIP HeLa-S3 ENCFF992MML 167 bp overlap
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 108 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 167 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF843EBZ 167 bp overlap
TCF12 3 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP H1 ENCFF203EBH 167 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 156 bp overlap
TCF3 3 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 117 bp overlap
ChIP NPC GSE154479.TCF3.NPC 167 bp overlap
TCF4 2 datasets
ChIP CAL-1 GSE76147.TCF4.CAL-1 119 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 151 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 167 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 167 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 128 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZC3H8 1 dataset
ChIP HCT-116 GSE47938.ZC3H8.HCT-116 167 bp overlap
ZFX 2 datasets
ChIP HepG2 ENCFF016NZF 167 bp overlap
ChIP HepG2 ENCFF016NZF 167 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 167 bp overlap
ZSCAN31 1 dataset
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
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