chr2 : 40,230,035 – 40,230,544

509 bp 68 TFs 0 linked genes

This 509 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

68 transcription factors

BCL6 1 dataset

Motif DE_60h DE_60h-BCL6_MA0463.3 13 bp overlap

BRD4 1 dataset

ChIP CHL-1 GSE95585.BRD4.CHL-1 326 bp overlap

CTCF 1 dataset

Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap

DUX4 1 dataset

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

Dux 1 dataset

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

EHF 1 dataset

Motif DE_60h DE_60h-EHF_MA0598.4 9 bp overlap

ELF1 1 dataset

Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap

ELF2 1 dataset

Motif DE_60h DE_60h-ELF2_MA1483.3 10 bp overlap

ELF3 1 dataset

Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap

ELF4 1 dataset

Motif DE_60h DE_60h-ELF4_MA0641.1 12 bp overlap

ELK1::HOXB13 1 dataset

Motif DE_60h DE_60h-ELK1HOXB13_MA1932.2 15 bp overlap

ELK4 1 dataset

Motif DE_60h DE_60h-ELK4_MA0076.3 9 bp overlap

EOMES 2 datasets

Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap

ChIP hESC GSE26097.EOMES.hESC 329 bp overlap

ERF::HOXB13 1 dataset

Motif DE_60h DE_60h-ERFHOXB13_MA1937.2 13 bp overlap

ETV1 1 dataset

Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap

ETV2::HOXB13 1 dataset

Motif DE_60h DE_60h-ETV2HOXB13_MA1943.2 13 bp overlap

ETV5::DRGX 1 dataset

Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap

ETV6 1 dataset

Motif DE_60h DE_60h-ETV6_MA0645.2 9 bp overlap

ETV7 1 dataset

Motif DE_60h DE_60h-ETV7_MA1708.2 9 bp overlap

Elf5 1 dataset

Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 419 bp overlap

ChIP DE DE-FOXA2-2 352 bp overlap

ChIP KerCT GSE90454.FOXA2.KerCT 173 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap

GABPA 1 dataset

Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 431 bp overlap

ChIP DE DE-GATA4-2 372 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-1 416 bp overlap

ChIP DE DE-GATA6-2 365 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 263 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 328 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 338 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 309 bp overlap

HOXB4 1 dataset

Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap

HOXD12::ELK1 1 dataset

Motif DE_60h DE_60h-HOXD12ELK1_MA1958.2 13 bp overlap

HOXD4 1 dataset

Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

IRF2 1 dataset

Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap

Ikzf3 1 dataset

Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap

MGA::EVX1 1 dataset

Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 206 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 183 bp overlap

Nfat5 1 dataset

Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap

OTX2 1 dataset

ChIP retina_pigment GSE60024.OTX2.retina_pigment 159 bp overlap

PHOX2A 1 dataset

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

PRDM9 1 dataset

Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap

REST 1 dataset

ChIP neural ENCSR000BTV.REST.neural 127 bp overlap

Rhox11 1 dataset

Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap

SPIB 1 dataset

Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap

SPIC 1 dataset

Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap

STAT1 1 dataset

Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap

Spi1 1 dataset

Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap

Stat4 1 dataset

Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap

Stat5a 1 dataset

Motif DE_60h DE_60h-Stat5a_MA1624.2 9 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_60h DE_60h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap

Stat6 1 dataset

Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 289 bp overlap

TBR1 1 dataset

Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap

TBX2 1 dataset

Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap

TBX20 1 dataset

Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap

TBX3 1 dataset

Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap

TEAD1 2 datasets

Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap

ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 188 bp overlap

TEAD3 1 dataset

Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap

TEAD4 2 datasets

Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap

ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 268 bp overlap

ZBTB11 1 dataset

Motif DE_60h DE_60h-ZBTB11_MA2329.1 9 bp overlap

ZBTB7A 1 dataset

Motif DE_60h DE_60h-ZBTB7A_MA0750.3 9 bp overlap

ZFP42 1 dataset

Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap

ZIM3 1 dataset

Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap

ZNF175 1 dataset

Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap

ZNF652 1 dataset

Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap

ZNF85 1 dataset

Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap

ZSCAN21 1 dataset

Motif DE_36h DE_36h-ZSCAN21_MA2336.1 7 bp overlap