chrX : 19,291,130 19,291,659
529 bp 87 TFs 3 linked genes
This 529 bp open chromatin element is linked to PDHA1, ADGRG2, and MAP3K15 and is bound by 87 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
PDHA1 52.6 kb Distal Multiome
ADGRG2 168.8 kb Distal Multiome
MAP3K15 224.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:19,286,130 – 19,296,659
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
BACH1 3 datasets
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
Motif DE_24h DE_24h-BACH1_MA1633.2 9 bp overlap
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 131 bp overlap
ChIP H-1_DE GSE126661.BRD3.H-1_DE 212 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 205 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 199 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 118 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 505 bp overlap
ETV1 1 dataset
Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap
EZH2 8 datasets
ChIP HepG2 ENCFF912EIW 206 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 163 bp overlap
ChIP PC-9 ENCFF152BST 224 bp overlap
ChIP PC-9 ENCFF152BST 391 bp overlap
ChIP PC-9 ENCFF634ONR 81 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 529 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 230 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 202 bp overlap
FOS::JUNB 3 datasets
Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_24h DE_24h-FOSJUNB_MA1134.2 9 bp overlap
Motif DE_36h DE_36h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 3 datasets
Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_24h DE_24h-FOSJUND_MA1141.2 9 bp overlap
Motif DE_36h DE_36h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 3 datasets
Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_24h DE_24h-FOSBJUNB_MA1135.2 9 bp overlap
Motif DE_36h DE_36h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1::JUN 3 datasets
Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUN_MA1128.2 9 bp overlap
Motif DE_36h DE_36h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 3 datasets
Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUNB_MA1137.2 9 bp overlap
Motif DE_36h DE_36h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 3 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_36h DE_36h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 5 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2_MA0478.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 291 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 271 bp overlap
FOSL2::JUN 3 datasets
Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_24h DE_24h-FOSL2JUN_MA1130.2 9 bp overlap
Motif DE_36h DE_36h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 3 datasets
Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_24h DE_24h-FOSL2JUNB_MA1138.2 9 bp overlap
Motif DE_36h DE_36h-FOSL2JUNB_MA1138.2 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 432 bp overlap
ChIP DE DE-FOXA2-2 296 bp overlap
FOXH1 1 dataset
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 443 bp overlap
ChIP DE DE-GATA4-2 452 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 408 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 371 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 396 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 458 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 418 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 458 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 378 bp overlap
Gfi1B 1 dataset
Motif DE_24h DE_24h-Gfi1B_MA0483.2 10 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 373 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 404 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 528 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 410 bp overlap
JUN::JUNB 3 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_24h DE_24h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 223 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 247 bp overlap
MYF5 1 dataset
Motif DE_24h DE_24h-MYF5_MA1641.2 8 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 529 bp overlap
Neurod2 2 datasets
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
POU2F1 1 dataset
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
POU3F4 1 dataset
Motif DE_24h DE_24h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 373 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 453 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1619.2 8 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 128 bp overlap
SMAD2 7 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 277 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 227 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 497 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 282 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 529 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 525 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 529 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 529 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 515 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 529 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 525 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 529 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 178 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 270 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 243 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 195 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 266 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 191 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 397 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 217 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 354 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 238 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 231 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 376 bp overlap
SPDEF 1 dataset
Motif DE_24h DE_24h-SPDEF_MA0686.2 10 bp overlap
SPI1 4 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 118 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 92 bp overlap
ChIP K562 ENCFF410ORC 143 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 92 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 211 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 315 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 438 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 300 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 342 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 216 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
ZBTB18 1 dataset
Motif DE_24h DE_24h-ZBTB18_MA0698.2 11 bp overlap
ZBTB26 1 dataset
Motif DE_24h DE_24h-ZBTB26_MA1579.2 8 bp overlap
ZFP14 2 datasets
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZIC1 1 dataset
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 61 bp overlap
ZNF549 1 dataset
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
ZNF667 1 dataset
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
ZNF75D 3 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_24h DE_24h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF768 1 dataset
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
Zfp335 3 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zfp809 2 datasets
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap