chrX : 11,887,165 11,887,726
561 bp 60 TFs 0 linked genes
This 561 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:11,882,165 – 11,892,726
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 5 datasets
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 248 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 115 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 218 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 234 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 179 bp overlap
ARID1A 2 datasets
ChIP 12Z GSE129781.ARID1A.12Z 55 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 79 bp overlap
Ar 1 dataset
Motif DE_60h DE_60h-Ar_MA0007.4 16 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 239 bp overlap
BRD4 1 dataset
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 226 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 279 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 291 bp overlap
ESR2 1 dataset
Motif DE_60h DE_60h-ESR2_MA0258.2 15 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 215 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 92 bp overlap
ChIP DE DE-FOXA2-1 357 bp overlap
ChIP DE DE-FOXA2-2 398 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 184 bp overlap
GATA2 3 datasets
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 153 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 474 bp overlap
ChIP DE DE-GATA4-2 548 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 402 bp overlap
GATA5 2 datasets
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 479 bp overlap
ChIP DE DE-GATA6-2 528 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 471 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 265 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 226 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 454 bp overlap
ChIP foregut GSE117136.GATA6.foregut 391 bp overlap
Gata3 2 datasets
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
KLF1 1 dataset
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_60h DE_60h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 206 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 174 bp overlap
KLF6 1 dataset
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 406 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 421 bp overlap
MAZ 1 dataset
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MXI1 1 dataset
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYF6 1 dataset
Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR3C1 2 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 240 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 219 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
POU5F1 2 datasets
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 106 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 89 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 408 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 424 bp overlap
SMAD3 1 dataset
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 78 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 205 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 561 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 413 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 282 bp overlap
SOX12 1 dataset
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 234 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 289 bp overlap
SOX18 1 dataset
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 245 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SRF 1 dataset
Motif DE_60h DE_60h-SRF_MA0083.3 16 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 354 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TRPS1 2 datasets
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZNF189 1 dataset
Motif DE_60h DE_60h-ZNF189_MA1725.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF93 1 dataset
Motif DE_60h DE_60h-ZNF93_MA1721.2 14 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap